View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20385_high_3 (Length: 420)
Name: NF20385_high_3
Description: NF20385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20385_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 43676608 - 43676998
Alignment:
| Q |
15 |
tcatcaaccgatcagtcaaaggactcccaacataatcagttataacttgtggagacaaaggagtcgttggttctgaactcacatcagaaacacatggtcg |
114 |
Q |
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| T |
43676608 |
tcatcaaccgatcagtcaaaggactcccaacataatcagttataacttgtggagacaaaggagtcgttggttccgaactcacatcagaaacacatggtcg |
43676707 |
T |
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| Q |
115 |
atacatcaccgataaacacagcttaccagaattagtatccacaggagtgaacacaaacttaagcatttcagcttcttgtttagtagtaaatggttcaaag |
214 |
Q |
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| T |
43676708 |
atacatcaccgataaacacagcttaccggaattagtatccacaggagtgaacacaaacttaagcatttcagcttcttgtttagtagtaaatggttcaaag |
43676807 |
T |
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| Q |
215 |
aaagtcgaaacacgatgagcaagactaaaagcagaaacatttgcagatgaactaagttccttaaaaatcttaaaagcaggtaaaagcctaacagtagcat |
314 |
Q |
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| T |
43676808 |
aaagtcgaaacacgatgagcaagactaaaagcagaaacatttgcagatgaactaagttccttaaaaatcttaaaagcaggtaaaagcctaacagtagcat |
43676907 |
T |
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| Q |
315 |
acaaagaccttaaaagcaaagtagatttcttatacaaattctgcaaaaaagtattacttgaccttcttgtagtgtttgcagtgttggaact |
405 |
Q |
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| T |
43676908 |
acaaagaccttaaaagcaaagtagatttcttatacaaattctgcaaaaaagtattacttgaccttcttgtagtgtttgcagtgttggaact |
43676998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 38886026 - 38885959
Alignment:
| Q |
293 |
ggtaaaagcctaacagtagcatacaaagaccttaaaagcaaagtagatttcttatacaaattctgcaa |
360 |
Q |
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| T |
38886026 |
ggtaaaagtcgaacagtggcatacaaagacctcaaaagtaaagttgatttcttatacaagttttgcaa |
38885959 |
T |
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