View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20385_low_1 (Length: 549)
Name: NF20385_low_1
Description: NF20385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20385_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 10342168 - 10342692
Alignment:
| Q |
14 |
atcatcaccattcagttaatcttgtttcaaccaagcaagaaatttgtcaaaagtaaacaaaaaagattctatgtttggtactttggtttatgaaccagat |
113 |
Q |
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| T |
10342168 |
atcatcaccattcagttaatcttgtttcaaccaagcaagaaatttgtcaaaagtaaacaaaaaagattctatgtttggtactttggtttatgaaccagat |
10342267 |
T |
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| Q |
114 |
accacaagagttcaagaataattcaat-----tcaaatattttgcatgtgagaaaagcaaaggctgcattctgagactgggaaagtcaatgtagatgatg |
208 |
Q |
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| T |
10342268 |
accacaagagctcaagaataatatgttggggttcaaatattttgcatgtgagaaaagcaaaggctgcattctgagattgggaa-gtcaatgtagatgatg |
10342366 |
T |
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| Q |
209 |
ctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacagaaagtttcaagaaagtagtatttgtacaaagaggtgtgtggaaaca |
308 |
Q |
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| T |
10342367 |
ctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacagaaagtttcaagaaattagtatttgtacaaagaggtgtgtggaaaca |
10342466 |
T |
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| Q |
309 |
agatcagtttatatcatgaaaacatgttcagatttgtactgtataaaataaaatatatattctcttaccaaatattaaggaaaaagtctatgctttgaat |
408 |
Q |
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| T |
10342467 |
agatcagtttatatcatgaaaacatgttcagatttgtactgt-----ataaaatatatattctctaaccaaatattgaggaataagtctatgctttgaat |
10342561 |
T |
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| Q |
409 |
tggaatatcttcttccatacgtgaaatacagtaaaaactgta-----tatattaattgtgtgaaactgtggatacactgtatcttcaatctgattatatt |
503 |
Q |
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| T |
10342562 |
tggaatatcttcatccatacgtgaaatacagtaaaaactgtatatattatattaattgtgtgaaactgtggatacactgtatcttcaatctgattatatt |
10342661 |
T |
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| Q |
504 |
ctaattgcatttctaagaacatggacacagg |
534 |
Q |
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| T |
10342662 |
ctaattgcatttctaagaacatggacacagg |
10342692 |
T |
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