View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20385_low_4 (Length: 317)
Name: NF20385_low_4
Description: NF20385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20385_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 40326798 - 40326510
Alignment:
| Q |
14 |
gaagcaatggcaaaacaaaccacagatagcatctgctggtacatgttgtttggcggggataatttgcaacggtaagctgtatattgcaaatgcaggagac |
113 |
Q |
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| T |
40326798 |
gaagcaatggcaaaacaaaccacagatagcatctgctggtacatgttgtttggcggggataatttgcaacggtatgctgtatattgcaaatgcaggagac |
40326699 |
T |
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| Q |
114 |
tcaagggctgtgttaggaagagtgaggaggggaacaagggaaacattagctgttcagttatctacagaacacaatgttaatatagaaactgagagagatg |
213 |
Q |
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| T |
40326698 |
tcaagggctgtgttaggaagagtgaggaggggaacaagggaaacattagccgttcagttatctacagaacacaatgttaatatagaaactgagagagatg |
40326599 |
T |
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| Q |
214 |
atgttcggtcaaagcacccctatgattcacagattgtggttatgaaacactcagtttggcgtgtgaaaggcatcatacaggtacatact |
302 |
Q |
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| T |
40326598 |
atgttcggtcaaagcacccctatgattcacagattgtggttatgaaacactcagtttggcgtgtgaaaggcatcatacaggtacatact |
40326510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 298
Target Start/End: Complemental strand, 28939013 - 28938748
Alignment:
| Q |
33 |
ccacagatagcatctgctggtacatgttgtttggcggggataatttgcaacggtaagctgtatattgcaaatgcaggagactcaagggctgtgttaggaa |
132 |
Q |
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| T |
28939013 |
ccacatattgcatcagcaggtacttgttgtttggtggggataatttgcaatggactggtatatattgcaaattctggtgactcaagggtggtgttaggaa |
28938914 |
T |
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| Q |
133 |
gagtgaggaggggaacaagggaaacattagctgttcagttatctacagaacacaatgttaatatagaaactgagagagatgatgttcggtcaaagcaccc |
232 |
Q |
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| T |
28938913 |
gactagagagggcaacaagggaaacatcagccatacaattatctgcagaacataatgttaaccttgaaagagtgagagatgaacttagattaagacaccc |
28938814 |
T |
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| Q |
233 |
ctatgattcacagattgtggttatgaaacactcagtttggcgtgtgaaaggcatcatacaggtaca |
298 |
Q |
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| T |
28938813 |
ttatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtaca |
28938748 |
T |
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