View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20386_high_2 (Length: 582)
Name: NF20386_high_2
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20386_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 2833055 - 2833605
Alignment:
| Q |
18 |
cacccctgattgtaacacctgaagttacatcaccaaacacaatttctcatccaatcatgttatgttaatttaataatttccaacctaatacggttaagaa |
117 |
Q |
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| T |
2833055 |
cacccctgattgtaacacctgaagttacatcaccaaacacaatttctcatccaatcatgttatgttaatttaataatttccaacctaatacggttaagaa |
2833154 |
T |
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| Q |
118 |
tnnnnnnnnnnnnntgatcatcataattcacactattaacaaaatccattttcatttcccagaaaattgaaatatgataggttaagaaatgttacttttt |
217 |
Q |
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| T |
2833155 |
taaaaaaaaata--tgatcatcataattcacactatta-caaaatccattttcatttcccagaaa-------tatgataggttaagaaatgttacttttt |
2833244 |
T |
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| Q |
218 |
tcactttatattataattgaaatctaggagnnnnnnnnctattattaataaaggtagcactaatgacttatttacaactgtctt--aatttaatcagatc |
315 |
Q |
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| T |
2833245 |
tcactttatattataattgaaatctaggagaaaaaaaactattattaataaaggtagcactaatgacttatttacaactgttttttaatttaatcagatc |
2833344 |
T |
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| Q |
316 |
aaatttgatcataaaagattatcaaaaccctcagaacctaacagaaccaatacattagattattcattctgagaaatatgaaagtaaagaaaatgaatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833345 |
aaatttgatcataaaagattatcaaaaccctcagaacctaacagaaccaatacattagattattcattctgagaaatatgaaagtaaagaaaatgaatat |
2833444 |
T |
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| Q |
416 |
acaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaac |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833445 |
acaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaac |
2833544 |
T |
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| Q |
516 |
atcttcacttcacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctc |
576 |
Q |
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| T |
2833545 |
atcttcacttcacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctc |
2833605 |
T |
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