View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20386_high_3 (Length: 350)
Name: NF20386_high_3
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20386_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 39909332 - 39909652
Alignment:
| Q |
13 |
aatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttnnnnn |
112 |
Q |
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| T |
39909332 |
aatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttaaaaa |
39909431 |
T |
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| Q |
113 |
nnnnnnnnncaataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattcc |
212 |
Q |
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| T |
39909432 |
aaaaaaaa-caataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattcc |
39909530 |
T |
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| Q |
213 |
gtgtgtttgcaagggtatatgtgtgtaatatgcttctgagttgaccgccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909531 |
gtgtgtttgcaagggtatatgtgtgtaatatgcttctgagttgaccaccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacata |
39909630 |
T |
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| Q |
313 |
atatttgggtccatctaatatg |
334 |
Q |
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|| ||||||||||||||||||| |
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| T |
39909631 |
atttttgggtccatctaatatg |
39909652 |
T |
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