View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20386_high_4 (Length: 249)
Name: NF20386_high_4
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20386_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 36844175 - 36844398
Alignment:
| Q |
9 |
aaaatcatcgtcaaaaatcatttgaaaaaacagtttttaaatggtgaagacagaattataaagagatatggataccaaaaagagaatcataattatactt |
108 |
Q |
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| T |
36844175 |
aaaatcatcgtcaaaa-tcatttgaaaaaacagtttttaaatggtgaagacagaattataaagagatatggataccaaaaagagaatcataattatactt |
36844273 |
T |
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| Q |
109 |
aaaaaatgtcatcacaaaagaaaacctaataactgcgtacaattaaaaaataatcctaaggtttgtctaagatcttctggatgaaactagtaaggttctt |
208 |
Q |
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| T |
36844274 |
aaaaaatgtcatcacaaaagaaaacctaataactacgtacaattaaaaaataatcctaaggtttgtctaagatcttctggatgaaactagtaaggttctt |
36844373 |
T |
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| Q |
209 |
gataacatcagttgtatccacatgt |
233 |
Q |
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| T |
36844374 |
gataacatcagttgtatccacatgt |
36844398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 18929891 - 18930123
Alignment:
| Q |
1 |
gaagaaagaaaatcatcgtcaaaaatcatttgaaaaaacagtttttaaatggtgaagacagaattataaagagatatggataccaaaaagagaatcataa |
100 |
Q |
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|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
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| T |
18929891 |
gaagaaagaacatcatcgtcaaaa-tcatttgaaaaaatagtttttaaatggtgaagacagaattataaagagatatagatatcaaaaagagaattataa |
18929989 |
T |
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| Q |
101 |
ttatact-taaaaaatgtcatcacaaaagaaaacctaataactgcgtacaattaaaaaataatcctaaggtttgtctaagatcttctggatgaaactagt |
199 |
Q |
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| T |
18929990 |
ttaaactgtaaaagatgtcatcacaaaagaaaacctaaaaacagcatacaattaaaaaataatcctaaggtttctctaagatcttctggaccaaactggt |
18930089 |
T |
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| Q |
200 |
aaggttcttgataacatcagttgtatccacatgt |
233 |
Q |
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| T |
18930090 |
aaggttcttgataaaatcagttgtatccgcatgt |
18930123 |
T |
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