View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20386_high_5 (Length: 215)
Name: NF20386_high_5
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20386_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28607196 - 28607392
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatactttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607196 |
tgtattttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
28607295 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
197 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607296 |
accaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
28607392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28611958 - 28612154
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatactttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611958 |
tgtattttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
28612057 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
197 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612058 |
accaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
28612154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 34907056 - 34906885
Alignment:
| Q |
26 |
tttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtg |
125 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34907056 |
tttctttcaattctattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtg |
34906957 |
T |
|
| Q |
126 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906956 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
34906885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8539158 - 8538964
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatactttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |||||||| ||||||| |
|
|
| T |
8539158 |
tgtattttcacttctgcttcgatgctttccttcaattccat-gcctctatttataggggaaataagccataagagttggaaatagttcacac-ctcttac |
8539061 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
197 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539060 |
accaaaagtcatgacattcagagtgtgaaacttggaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
8538964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 17124139 - 17123956
Alignment:
| Q |
12 |
ttctgcttcaatactttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtca |
111 |
Q |
| |
|
|||| |||| || |||||||||| | |||||| ||||||||||| | ||| ||||||||||||| || || ||||||| | ||||||||||||||||| |
|
|
| T |
17124139 |
ttctacttcgatgctttccttcattgccattgactctatttataaga-aaacaagccgtaagagtttgaattagttcaca-attcttacaccaaaagtca |
17124042 |
T |
|
| Q |
112 |
tggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccac |
197 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||| || ||||||||||| |||||||| |
|
|
| T |
17124041 |
taacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccac |
17123956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37040816 - 37040927
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatactttccttcaattccattgcctctatttataggggaaatga-gccgtaagagttggatttggttcacacactctta |
99 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| | ||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37040816 |
tgtattttcacttctgcttcaatgctttccttcactatcattgtctctatttataagagaaatgaagccgtaagagttggatttggttcacacactctta |
37040915 |
T |
|
| Q |
100 |
caccaaaagtca |
111 |
Q |
| |
|
||| |||||||| |
|
|
| T |
37040916 |
cactaaaagtca |
37040927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University