View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20386_low_1 (Length: 596)

Name: NF20386_low_1
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20386_low_1
NF20386_low_1
[»] chr7 (9 HSPs)
chr7 (310-582)||(22972773-22973047)
chr7 (16-228)||(22970213-22970434)
chr7 (310-431)||(22964529-22964650)
chr7 (364-402)||(26493898-26493936)
chr7 (348-500)||(11618484-11618637)
chr7 (364-402)||(19399931-19399969)
chr7 (364-402)||(27387490-27387528)
chr7 (352-441)||(43265834-43265923)
chr7 (470-539)||(32136853-32136924)
[»] chr8 (17 HSPs)
chr8 (310-582)||(12585610-12585884)
chr8 (16-228)||(12587193-12587414)
chr8 (310-544)||(26571608-26571849)
chr8 (125-228)||(27323205-27323308)
chr8 (111-226)||(35036079-35036198)
chr8 (16-129)||(27324409-27324532)
chr8 (428-517)||(2537183-2537274)
chr8 (384-537)||(40381604-40381759)
chr8 (384-500)||(42164003-42164121)
chr8 (468-527)||(26647930-26647989)
chr8 (338-513)||(36974206-36974380)
chr8 (365-400)||(30791644-30791679)
chr8 (368-402)||(16532815-16532849)
chr8 (364-402)||(21958465-21958503)
chr8 (435-500)||(16340254-16340319)
chr8 (430-500)||(37728440-37728512)
chr8 (352-441)||(45486095-45486184)
[»] chr6 (7 HSPs)
chr6 (310-582)||(6901462-6901742)
chr6 (81-228)||(6901002-6901149)
chr6 (16-79)||(6900740-6900803)
chr6 (384-537)||(6822537-6822692)
chr6 (468-513)||(7644774-7644819)
chr6 (352-441)||(18817036-18817125)
chr6 (352-441)||(24901805-24901894)
[»] chr3 (16 HSPs)
chr3 (310-582)||(49600645-49600921)
chr3 (16-228)||(49602743-49602964)
chr3 (424-521)||(44111228-44111326)
chr3 (384-500)||(1902120-1902238)
chr3 (384-500)||(1911566-1911684)
chr3 (407-537)||(52259697-52259829)
chr3 (432-516)||(34962258-34962345)
chr3 (424-521)||(10321273-10321374)
chr3 (364-402)||(53710351-53710389)
chr3 (468-537)||(54393337-54393406)
chr3 (364-400)||(24908579-24908615)
chr3 (384-500)||(11027201-11027319)
chr3 (364-399)||(37382056-37382091)
chr3 (364-402)||(31988982-31989020)
chr3 (352-441)||(26903274-26903363)
chr3 (352-441)||(36617677-36617766)
[»] chr1 (6 HSPs)
chr1 (16-228)||(21880191-21880412)
chr1 (418-500)||(29095818-29095902)
chr1 (364-402)||(21973972-21974010)
chr1 (384-537)||(30294105-30294260)
chr1 (364-402)||(17127392-17127430)
chr1 (352-441)||(1016905-1016994)
[»] chr2 (12 HSPs)
chr2 (78-226)||(22329701-22329848)
chr2 (310-516)||(22318521-22318720)
chr2 (428-517)||(7813552-7813641)
chr2 (425-513)||(31781011-31781099)
chr2 (364-402)||(22464623-22464661)
chr2 (364-402)||(22483502-22483540)
chr2 (364-402)||(34526305-34526343)
chr2 (352-441)||(4075566-4075655)
chr2 (428-527)||(21490270-21490369)
chr2 (364-402)||(35649842-35649880)
chr2 (467-499)||(42071433-42071465)
chr2 (391-459)||(42530951-42531019)
[»] chr4 (10 HSPs)
chr4 (406-539)||(6495718-6495853)
chr4 (407-517)||(27907245-27907355)
chr4 (402-505)||(46732648-46732752)
chr4 (443-491)||(50977860-50977910)
chr4 (364-402)||(27364836-27364874)
chr4 (364-402)||(55464844-55464882)
chr4 (310-360)||(4923058-4923108)
chr4 (423-459)||(1112105-1112141)
chr4 (467-499)||(24368060-24368092)
chr4 (468-500)||(47552075-47552107)
[»] chr5 (12 HSPs)
chr5 (78-212)||(35360378-35360511)
chr5 (468-527)||(10710987-10711046)
chr5 (427-539)||(18108244-18108357)
chr5 (449-500)||(27343160-27343211)
chr5 (364-402)||(26540839-26540877)
chr5 (468-537)||(3294213-3294281)
chr5 (463-544)||(14811437-14811517)
chr5 (468-539)||(27271928-27271999)
chr5 (364-402)||(203804-203842)
chr5 (433-516)||(17832169-17832254)
chr5 (384-537)||(15726879-15727034)
chr5 (418-494)||(43507816-43507892)
[»] scaffold0168 (1 HSPs)
scaffold0168 (364-402)||(15767-15805)
[»] scaffold0019 (1 HSPs)
scaffold0019 (364-402)||(135038-135076)
[»] scaffold0012 (1 HSPs)
scaffold0012 (364-402)||(197058-197096)
[»] scaffold0007 (1 HSPs)
scaffold0007 (355-402)||(259862-259909)
[»] scaffold0015 (1 HSPs)
scaffold0015 (364-402)||(214345-214383)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 310 - 582
Target Start/End: Original strand, 22972773 - 22973047
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  22972773 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 22972872  T
Q  410 gaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatat--agagagatttttattgagattgaaaatgagaaaatcattcgatattt 507  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22972873 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatagagagagatttttattgagattgaaaatgagaaaatcattcgatattt 22972972  T
Q  508 ctaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 582  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972973 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 22973047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 22970213 - 22970434
Alignment:
Q  16 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttg---------tttattattgtaatgagagtta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  22970213 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta 22970312  T
Q  107 acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22970313 acatctattattaccttgttgatattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattattcaacaatctta 22970412  T
Q  207 aactttaccgctattttattgc 228  Q
    ||||||||  ||||||||||||    
T  22970413 aactttactactattttattgc 22970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 22964529 - 22964650
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  22964529 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 22964628  T
Q  410 gaaatcgaatgagtgatcaatg 431  Q
    ||||| ||||| ||||||||||    
T  22964629 gaaatggaatgggtgatcaatg 22964650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 26493936 - 26493898
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  26493936 gttgaaagagctttttcagcaatgaagattatcaagact 26493898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 500
Target Start/End: Complemental strand, 11618637 - 11618484
Alignment:
Q  348 tgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtcta 447  Q
    ||||||| |||||| ||||||||| | ||| || |||||||  ||||||| || |||| | |||||||  ||||| ||| |||  |||||||||||| ||    
T  11618637 tgtggcagctgcaagagttgaaagggatttctctgctatgagtattatcatgaatcagatacgaaatcacatgagagatgaataattaaatgattgttta 11618538  T
Q  448 gttac-ttatatatagagagatttttattgagattgaaaatgagaaaatcattc 500  Q
    ||||| ||||  | |  |  ||||||||||| ||||||||| ||||||||||||    
T  11618537 gttactttattgaaattgttatttttattgatattgaaaattagaaaatcattc 11618484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 19399931 - 19399969
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  19399931 gttgaaagagctttttcaacaatgaagattatcaagact 19399969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 27387528 - 27387490
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  27387528 gttgaaagagctttttcagcaatgaagattattaagact 27387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 43265834 - 43265923
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  43265834 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 43265923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 32136924 - 32136853
Alignment:
Q  470 tttattgagatt--gaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaattgt 539  Q
    ||||||||||||  ||||||||||||| ||||||||| ||  |||| |||| || |||||||| ||||||||    
T  32136924 tttattgagattttgaaaatgagaaaaacattcgataatttcaaaaaatgataaatcgtagagaacaattgt 32136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 310 - 582
Target Start/End: Complemental strand, 12585884 - 12585610
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12585884 ttggtatatttgcttttatagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 12585785  T
Q  410 gaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatat--atagagagatttttattgagattgaaaatgagaaaatcattcgatattt 507  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  12585784 gaaattgaatgggtgatcaatggttaaatgattgtctagttacttatatagagagagagatttttattgagattgaaaatgagaaaatcattcgatattt 12585685  T
Q  508 ctaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 582  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12585684 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 12585610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 12587414 - 12587193
Alignment:
Q  16 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta 106  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  12587414 tcttcctccattcatggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta 12587315  T
Q  107 acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12587314 acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatctta 12587215  T
Q  207 aactttaccgctattttattgc 228  Q
    ||||||||  ||||||||||||    
T  12587214 aactttactactattttattgc 12587193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 310 - 544
Target Start/End: Complemental strand, 26571849 - 26571608
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaa-ctgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttg 408  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  26571849 ttggtatatttgcttttaaagttatctttgatactacatgtggcaaactacaacagttgaaagagctttctcggctatgaagattatcaagactgagttg 26571750  T
Q  409 cgaaatcgaatgagtgatcaatggtt-aaatgattgtctagttacttatatatagagaga----tttttattgagattgaaaatgagaaaatcattcgat 503  Q
    | |||||| ||   |||||||||||| ||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||||    
T  26571749 caaaatcggatagatgatcaatggtttaaatgattgtctagttacttatatatatagagagaggtttttattgagattgaaaatgagaaaatcattcgat 26571650  T
Q  504 a-tttctaaaatatgacaagtcgtagaggacaattgtaattg 544  Q
    | |||| |||| ||||||||||||| ||||||||||||||||    
T  26571649 attttcaaaaaaatgacaagtcgtataggacaattgtaattg 26571608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 27323308 - 27323205
Alignment:
Q  125 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttta 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||| | | |||||||    
T  27323308 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta 27323209  T
Q  225 ttgc 228  Q
    ||||    
T  27323208 ttgc 27323205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 35036079 - 35036198
Alignment:
Q  111 ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgggattattcaacaatctta 206  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    |||||| || |||||||||||||||| ||| |     
T  35036079 ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg 35036178  T
Q  207 aactttaccgctattttatt 226  Q
    |||||| || ||||||||||    
T  35036179 aactttgccactattttatt 35036198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 27324532 - 27324409
Alignment:
Q  16 tcttcctccattggtggtgatct---aagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagag 103  Q
    |||||||||||||||||||||||   |||||||| || || |||  || ||||||||||||||||||||||||||         ||||||||||||||||    
T  27324532 tcttcctccattggtggtgatcttctaagaggtaaacccttttc--taattttatgattttaaacttatttgtttcatttgtttattattgtaatgagag 27324435  T
Q  104 ttaacatctattattaccttgttgat 129  Q
    |||||||||||||| |||||||||||    
T  27324434 ttaacatctattatcaccttgttgat 27324409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 517
Target Start/End: Complemental strand, 2537274 - 2537183
Alignment:
Q  428 aatggttaaatgattgtctagttacttatatatagagagat--ttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatg 517  Q
    ||||||||||| ||||| |||||||||||||| ||||||||  |||| |||  |||||||||||||||||||||| || | |||||||||||    
T  2537274 aatggttaaattattgtttagttacttatatagagagagatatttttgttggtattgaaaatgagaaaatcattcaatgtatctaaaatatg 2537183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 537
Target Start/End: Complemental strand, 40381759 - 40381604
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagagat--ttttattgagatt 481  Q
    |||||| |||||||||| ||   || ||||||||||||| ||| |  |||||||||||||| |||||| ||||||| ||| | ||  ||||||||| |||    
T  40381759 tatgaatattatcaagaatcgcatgtgaaatcgaatgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatttttattgatatt 40381660  T
Q  482 gaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
    ||||||||||||||| ||| |  |||||| ||||| | || ||||||| |||||||    
T  40381659 gaaaatgagaaaatctttcaaagtttctataatataaaaaatcgtagaagacaatt 40381604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 500
Target Start/End: Original strand, 42164003 - 42164121
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatataga--gagatttttattgagatt 481  Q
    |||||| |||||||||| |||  |  ||||||||||||| ||| |  |||||||||||||| |||||| ||||||| |||  || ||||||||||| |||    
T  42164003 tatgaatattatcaagaatcaaataggaaatcgaatgagagataatcggttaaatgattgtttagttatttatatagagaaggatatttttattgatatt 42164102  T
Q  482 gaaaatgagaaaatcattc 500  Q
     ||||||||||||||||||    
T  42164103 aaaaatgagaaaatcattc 42164121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 26647930 - 26647989
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgta 527  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||    
T  26647930 tttttattgagattgaaaatgagaaaattattcaatatttttaaaatatggcaaatcgta 26647989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 513
Target Start/End: Complemental strand, 36974380 - 36974206
Alignment:
Q  338 tgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaa 437  Q
    |||| |||||||||||||||||||||  |||||||| ||| || ||| |  |  || |||||| | ||||||||||||  || || ||||| |   ||||    
T  36974380 tgatactacatgtggcaactgcaacaactgaaagagttttctctgctttataagttttcaagaatgagttgcgaaatcacataagagatcatt---taaa 36974284  T
Q  438 tgattgtctagttacttatatatagagaga--tttttattgagattgaaaatgagaaaatcattcgatatttctaaaa 513  Q
    ||||||  |||||| ||||||||| |||||  |||||| |||||| ||||||||| ||| ||||| |||||| |||||    
T  36974283 tgattgcttagttaattatatataaagagatgtttttagtgagatagaaaatgagtaaaacattcaatatttttaaaa 36974206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 30791679 - 30791644
Alignment:
Q  365 ttgaaagagctttttcagctatgaagattatcaaga 400  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30791679 ttgaaagagctttttcagcaatgaagattatcaaga 30791644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 16532849 - 16532815
Alignment:
Q  368 aaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||| ||||||||||||||||||    
T  16532849 aaagagctttttcagcaatgaagattatcaagact 16532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 21958465 - 21958503
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  21958465 gttgaaagagctttttcaccaatgaagattatcaagact 21958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 16340319 - 16340254
Alignment:
Q  435 aaatgattgtctagttacttatatatagagagatttttattgagattgaaaatgagaaaatcattc 500  Q
    |||||||||| |||||| ||||| | ||| |  |||||||||| ||||||||| ||||||||||||    
T  16340319 aaatgattgtttagttatttatacagagatatttttttattgatattgaaaataagaaaatcattc 16340254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 37728440 - 37728512
Alignment:
Q  430 tggttaaatgattgtctagttacttatatataga--gagatttttattgagattgaaaatgagaaaatcattc 500  Q
    |||||||||||| || |||||| ||||||| |||  || ||||||||||| ||||||||| ||||||| ||||    
T  37728440 tggttaaatgatcgtttagttatttatatagagaatgatatttttattgatattgaaaattagaaaattattc 37728512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 45486095 - 45486184
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  45486095 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 45486184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 310 - 582
Target Start/End: Original strand, 6901462 - 6901742
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  6901462 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactacaacagctgaaagagctttctcagctatgaagattatcaagactcagctgc 6901561  T
Q  410 gaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatat--------agagagatttttattgagattgaaaatgagaaaatcattcg 501  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  6901562 gaaatcgaatggatgatcaatggttaaatgattgtctagttacttatatatagagagagagagagatttttattgagattgaaaatgagaaaatcattcg 6901661  T
Q  502 atatttctaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 582  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901662 atatttccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 6901742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 6901002 - 6901149
Alignment:
Q  81 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901002 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 6901101  T
Q  181 ttatttgggattattcaacaatcttaaactttaccgctattttattgc 228  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||||||    
T  6901102 ttatttaggattattcaacaatattaaactttactactattttattgc 6901149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 6900740 - 6900803
Alignment:
Q  16 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaactt 79  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6900740 tcttcctccattggtggtgatctaagaggtgcactctcttccttatttttatgattttaaactt 6900803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 537
Target Start/End: Complemental strand, 6822692 - 6822537
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatag--agagatttttattgagatt 481  Q
    |||||| |||||||||| || | || ||||||||||||| ||| |  |||||||| ||||| |||||| ||||||| ||  ||| ||||||||||| |||    
T  6822692 tatgaatattatcaagaatcggatgtgaaatcgaatgagagatgatcggttaaataattgtttagttatttatataaagaaagaaatttttattgatatt 6822593  T
Q  482 gaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
    ||||||||  ||||||||| |  |||| | ||||||| || | ||| |||||||||    
T  6822592 gaaaatgaacaaatcattcaaagtttccataatatgaaaaattgtaaaggacaatt 6822537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 513
Target Start/End: Complemental strand, 7644819 - 7644774
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaa 513  Q
    |||||||| |||||||||||||||||| ||||  ||||||||||||    
T  7644819 tttttattaagattgaaaatgagaaaaacatttaatatttctaaaa 7644774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 18817125 - 18817036
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  18817125 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 18817036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 24901894 - 24901805
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  24901894 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 24901805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 310 - 582
Target Start/End: Complemental strand, 49600921 - 49600645
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49600921 ttggtatatttgcttttaaagttatctttgatactacttgtggcaactgcaacagctgaaagagctttttcagctatgaagattatcaagactcagttgc 49600822  T
Q  410 gaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatat--atagagagatttttattgagattgaaaatgagaaaatcattcgatattt 507  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  49600821 gaaatcgaatgggtgattaatggttagatgattgtctagttacttatatagaaagagagatttttattgagattgaaaatgagaaaatcattcgatattt 49600722  T
Q  508 ctaaaatatgacaagtcg--tagaggacaattgtaattgttgttggcagctgggttttggtttggtgatggcctttg 582  Q
    | |||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49600721 ccaaaatatgaatagtcgcatagaggacaattgtaattgttgttggcagctgggttttggtttggtgatgacctttg 49600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 49602964 - 49602743
Alignment:
Q  16 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||    
T  49602964 tcttcctccattggtggtgatctaagaggtacactctcttccttatttatatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta 49602865  T
Q  107 acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49602864 acatctattattaccttgttgatattgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta 49602765  T
Q  207 aactttaccgctattttattgc 228  Q
    |||| |||  ||||||||||||    
T  49602764 aactctactactattttattgc 49602743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 521
Target Start/End: Complemental strand, 44111326 - 44111228
Alignment:
Q  424 gatcaatggttaaatgattgtctagttacttatatatagagagat--ttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaa 521  Q
    ||||||||||||| || |||| |||||||||||||| |||| |||  |||||||||||| |||||||| ||||| |||| |||||||||||| |||||||    
T  44111326 gatcaatggttaattg-ttgtttagttacttatatagagagtgatatttttattgagatcgaaaatgaaaaaattattcaatatttctaaaaaatgacaa 44111228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 500
Target Start/End: Original strand, 1902120 - 1902238
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagagattttt--attgagatt 481  Q
    |||||| |||||||||| || | ||||||||| |||||  ||| | ||||||||| ||||| |||||| ||||||| ||| |||| |||  ||||| |||    
T  1902120 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 1902219  T
Q  482 gaaaatgagaaaatcattc 500  Q
    |||||||||||||||||||    
T  1902220 gaaaatgagaaaatcattc 1902238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 500
Target Start/End: Original strand, 1911566 - 1911684
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagagattttt--attgagatt 481  Q
    |||||| |||||||||| || | ||||||||| |||||  ||| | ||||||||| ||||| |||||| ||||||| ||| |||| |||  ||||| |||    
T  1911566 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 1911665  T
Q  482 gaaaatgagaaaatcattc 500  Q
    |||||||||||||||||||    
T  1911666 gaaaatgagaaaatcattc 1911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 537
Target Start/End: Original strand, 52259697 - 52259829
Alignment:
Q  407 tgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagag--atttttattgagattgaaaatgagaaaatcattcgata 504  Q
    |||||||||||||| | ||| | ||||||||||||||| | |||  ||||||  || |||  ||||||||||| ||||| |||||||||||||||| ||     
T  52259697 tgcgaaatcgaatgggagatgactggttaaatgattgtttggttgtttatatggagggaggtatttttattgatattgagaatgagaaaatcattcaatg 52259796  T
Q  505 tttctaaaatatgacaagtcgtagaggacaatt 537  Q
    |||||| ||||| | |  |||||||||||||||    
T  52259797 tttctagaatataaaacatcgtagaggacaatt 52259829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 516
Target Start/End: Complemental strand, 34962345 - 34962258
Alignment:
Q  432 gttaaatgattgtctagttacttatatatagagagat---ttttattgagattgaaaatgagaaaatcattcgatatttctaaaatat 516  Q
    ||||||||||||| |||||| ||||||| |  |||||   ||||||||| |||||||| ||||||||||||| ||||||||| |||||    
T  34962345 gttaaatgattgtttagttatttatatagaatgagatactttttattgatattgaaaacgagaaaatcattcaatatttctagaatat 34962258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 10321273 - 10321374
Alignment:
Q  424 gatcaatggttaaatgattgtctagttacttatatatagagaga----tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgac 519  Q
    |||||||| |||||||||| | |||||||  ||||| ||||||     |||||||||||||||||||| ||||||||||| ||||||| | ||| |||||    
T  10321273 gatcaatgattaaatgattatttagttacaaatatagagagaggagtgtttttattgagattgaaaatcagaaaatcatttgatatttatgaaaaatgac 10321372  T
Q  520 aa 521  Q
    ||    
T  10321373 aa 10321374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 53710351 - 53710389
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  53710351 gttgaaagagctttttcagcaatgaagattatcaagact 53710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 54393337 - 54393406
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
    |||||||||| |||||||||||||||||||||| |  |||| | |||||||  | |||||||||||||||    
T  54393337 tttttattgatattgaaaatgagaaaatcattcaaagtttccataatatgaataatcgtagaggacaatt 54393406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 24908615 - 24908579
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaaga 400  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24908615 gttgaaagagctttttcagcaatgaagattatcaaga 24908579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 500
Target Start/End: Original strand, 11027201 - 11027319
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatag--agagatttttattgagatt 481  Q
    |||||| |||||||||| ||   || ||||||||||||| ||| | || |||||| ||| | |||||| |||||||  |  ||| ||||||||||| |||    
T  11027201 tatgaatattatcaagaatcgaatgtgaaatcgaatgagagatgactgcttaaataattatttagttatttatatagtgtaagatatttttattgatatt 11027300  T
Q  482 gaaaatgagaaaatcattc 500  Q
    |||||||| ||||||||||    
T  11027301 gaaaatgataaaatcattc 11027319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 37382091 - 37382056
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaag 399  Q
    |||||||||||||||||||| |||||||||||||||    
T  37382091 gttgaaagagctttttcagcaatgaagattatcaag 37382056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 31988982 - 31989020
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  31988982 gttgaaagagctttttcagcaatgaagattattaagact 31989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 26903363 - 26903274
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  26903363 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 26903274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 36617677 - 36617766
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  36617677 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 36617766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 21880412 - 21880191
Alignment:
Q  16 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  21880412 tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta 21880313  T
Q  107 acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880312 acatctattattaccttgttgatattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattattcaacaatctta 21880213  T
Q  207 aactttaccgctattttattgc 228  Q
    ||||||||  ||||||||||||    
T  21880212 aactttactactattttattgc 21880191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 29095818 - 29095902
Alignment:
Q  418 atgagtgatcaatggttaaatgattgtctagttacttatatatagagagat--ttttattgagattgaaaatgagaaaatcattc 500  Q
    ||||||||||||||  || || | ||| |||||||||| ||| ||| ||||  ||||||||||||||||||||||||||||||||    
T  29095818 atgagtgatcaatgactatataactgtttagttacttacatagagaaagatgtttttattgagattgaaaatgagaaaatcattc 29095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 21974010 - 21973972
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  21974010 gttgaaagagctttttcagcaatgaagattatcaagact 21973972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 537
Target Start/End: Complemental strand, 30294260 - 30294105
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatat--atagagagatttttattgagatt 481  Q
    |||||| |||||||||| || | |||||||||||||||| ||| |  ||||||| |||||| |||||| ||||||  | | ||| |||||||||||  ||    
T  30294260 tatgaatattatcaagaatctgatgcgaaatcgaatgagagatgatcggttaaaagattgtttagttatttatataaaaaaagatatttttattgatttt 30294161  T
Q  482 gaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
     ||||| |||||| ||||| |  |||| | ||||||| || | ||||| |||||||    
T  30294160 caaaataagaaaaccattcaaagtttccataatatgaaaaattgtagaagacaatt 30294105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 17127392 - 17127430
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  17127392 gttgaaagagctttttcaacaatgaagattatcaagact 17127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 1016905 - 1016994
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || ||   |||| ||||||||||||||||||||    
T  1016905 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgat 1016994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 22329848 - 22329701
Alignment:
Q  78 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 177  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329848 ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 22329749  T
Q  178 tgattatttgggattattcaacaatcttaaactttaccgctattttatt 226  Q
    ||||||||||||||||||  |||||||| || ||| | |||||||||||    
T  22329748 tgattatttgggattatt-tacaatcttgaattttgctgctattttatt 22329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 310 - 516
Target Start/End: Complemental strand, 22318720 - 22318521
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgc 409  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||      |||||||||||| ||| |||| |||||||| | | || ||||||    
T  22318720 ttggtatatttgcttttaaagttatctttgatactacatgtggcaacagc------tgaaagagctttctcatctataaagattattatgtctgagttgc 22318627  T
Q  410 gaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagaga--tttttattgagattgaaaatgagaaaatcattcgatattt 507  Q
     |||| ||||| ||||| ||||||||||||||||   |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  22318626 aaaattgaatgggtgatgaatggttaaatgattg---agttacttatatatagagagaggtttttattgagattgaaaatgtgaaaatcattcgatattt 22318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 517
Target Start/End: Original strand, 7813552 - 7813641
Alignment:
Q  428 aatggttaaatgattgtctagttacttatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatg 517  Q
    ||||||||||  ||||| |||||||||||||| ||||| || ||| |||  ||| |||||||||||||||||| ||||||||| ||||||    
T  7813552 aatggttaaacaattgtttagttacttatatagagagatatatttgttggtatttaaaatgagaaaatcattcaatatttctagaatatg 7813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 31781011 - 31781099
Alignment:
Q  425 atcaatggttaaatgattgtctagttacttatatatagagagat-ttttattgagattgaaaatgagaaaatcattcgatatttctaaaa 513  Q
    |||||| ||||||||||||| |||||||||||| | |||||||  ||||||| | ||||||||| ||||||| ||||||||||| |||||    
T  31781011 atcaatagttaaatgattgt-tagttacttatacagagagagaagttttattaaaattgaaaataagaaaataattcgatatttttaaaa 31781099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 22464623 - 22464661
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  22464623 gttgaaagagctttttcagcaatgaagattatcaagact 22464661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 22483502 - 22483540
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  22483502 gttgaaagagctttttcagcaatgaagattatcaagact 22483540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 34526305 - 34526343
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  34526305 gttgaaagagctttttcagcaatgaagattatcaagact 34526343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 4075655 - 4075566
Alignment:
Q  352 gcaactgcaacagttgaaagagctttttcagctatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgat 441  Q
    ||||||||||  |||||| | | ||||||||||||||||||| | |||| ||| || || |||  |||| ||||||||||||||||||||    
T  4075655 gcaactgcaagtgttgaacgtgttttttcagctatgaagattgtgaagagtcatttacgtaataaaatgggtgatcaatggttaaatgat 4075566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 527
Target Start/End: Original strand, 21490270 - 21490369
Alignment:
Q  428 aatggttaaatgattgtctagttacttatatatagag--agatttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcg 525  Q
    ||||||||||||||||||  |||||||| ||| |||   | ||||||||||| ||||||| |||||||||||||| || |||| | ||||||| || |||    
T  21490270 aatggttaaatgattgtc--gttacttagatagagatgtatatttttattgatattgaaattgagaaaatcattcaatgtttcaagaatatgaaaaatcg 21490367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 35649880 - 35649842
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35649880 gttgaaagagctttttcagcaatgaagattataaagact 35649842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 499
Target Start/End: Complemental strand, 42071465 - 42071433
Alignment:
Q  467 atttttattgagattgaaaatgagaaaatcatt 499  Q
    ||||||||||| |||||||||||||||||||||    
T  42071465 atttttattgatattgaaaatgagaaaatcatt 42071433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 459
Target Start/End: Original strand, 42530951 - 42531019
Alignment:
Q  391 attatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatata 459  Q
    |||||||||| || | ||||||||| |||||| ||| |  |||||||||||||| |||||| |||||||    
T  42530951 attatcaagaatcggatgcgaaatcaaatgagagatgatcggttaaatgattgtttagttatttatata 42531019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 539
Target Start/End: Original strand, 6495718 - 6495853
Alignment:
Q  406 ttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagag----atttttattgagattgaaaatgagaaaatcattcg 501  Q
    ||||||||||| |||||| |||||||  ||||||||||| |||||||||||||||||||||    ||||||||||||| | ||||||||||||||||       
T  6495718 ttgcgaaatcgcatgagtaatcaatgactaaatgattgtttagttacttatatatagagagagatatttttattgagactaaaaatgagaaaatcat--a 6495815  T
Q  502 atatttctaaaatatgacaagtcgtagaggacaattgt 539  Q
    ||||||  |||||||||||| ||||| || ||||||||    
T  6495816 atattttcaaaatatgacaaatcgtatagaacaattgt 6495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 517
Target Start/End: Complemental strand, 27907355 - 27907245
Alignment:
Q  407 tgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatt 506  Q
    |||||||||| ||  | ||| ||||||||||  ||||| |||||||||||||| ||||| |||||| |||  ||||||||||| |||||||||| |||||    
T  27907355 tgcgaaatcgcataggagatgaatggttaaacaattgtttagttacttatatagagagatatttttgttggtattgaaaatgaaaaaatcattcaatatt 27907256  T
Q  507 tctaaaatatg 517  Q
    |  ||||||||    
T  27907255 ttcaaaatatg 27907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 505
Target Start/End: Complemental strand, 46732752 - 46732648
Alignment:
Q  402 tcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatagagagat-ttttattgagattgaaaatgagaaaatcattc 500  Q
    |||| ||||||||| |||| | ||| | ||||||| ||||||| || ||| ||||||| | |||||| ||||||||| |||||||||||||||| |||||    
T  46732752 tcagatgcgaaatcaaatgggagatgactggttaattgattgtttaattatttatatagaaagagatattttattgatattgaaaatgagaaaaacattc 46732653  T
Q  501 gatat 505  Q
     ||||    
T  46732652 aatat 46732648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 50977910 - 50977860
Alignment:
Q  443 gtctagttacttatatatagagagat--ttttattgagattgaaaatgaga 491  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  50977910 gtctaattacttatatatagagagatgtttttattgagattgaaaatgaga 50977860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 27364836 - 27364874
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  27364836 gttgaaagagctttttcagcaatgaagattatcaagact 27364874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 55464882 - 55464844
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  55464882 gttgaaagagctttttcagcaatgaagattatcaagact 55464844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 4923058 - 4923108
Alignment:
Q  310 ttggtatatttgcttttaaagttatctttgatgctacatgtggcaactgca 360  Q
    ||||||||||| |||||| ||||||| ||||| ||||||||| ||||||||    
T  4923058 ttggtatatttacttttagagttatcattgatactacatgtgacaactgca 4923108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 459
Target Start/End: Complemental strand, 1112141 - 1112105
Alignment:
Q  423 tgatcaatggttaaatgattgtctagttacttatata 459  Q
    |||||||||||||||||||||||| || |||||||||    
T  1112141 tgatcaatggttaaatgattgtcttgtaacttatata 1112105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 499
Target Start/End: Original strand, 24368060 - 24368092
Alignment:
Q  467 atttttattgagattgaaaatgagaaaatcatt 499  Q
    ||||||||||| |||||||||||||||||||||    
T  24368060 atttttattgacattgaaaatgagaaaatcatt 24368092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 47552075 - 47552107
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattc 500  Q
    |||||||||| ||||||||||||||||||||||    
T  47552075 tttttattgatattgaaaatgagaaaatcattc 47552107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 35360511 - 35360378
Alignment:
Q  78 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 177  Q
    ||||||||| ||||  |||| | |||||||  | |||||||||||||  |||||| || || ||||||| |||  ||||||||||||||||||| || ||    
T  35360511 ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag 35360413  T
Q  178 tgattatttgggattattcaacaatcttaaacttt 212  Q
    || |||||||| ||||||||||||| |||||||||    
T  35360412 tgtttatttggaattattcaacaattttaaacttt 35360378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 10711046 - 10710987
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgta 527  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||    
T  10711046 tttttattgagattgaaaatgagaaaattattcaatatttttaaaatatggcaaatcgta 10710987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 539
Target Start/End: Complemental strand, 18108357 - 18108244
Alignment:
Q  427 caatggttaaatgattgtctagttacttatatatagagagat--ttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtc 524  Q
    ||||||||||||| |  | |||||||||||||||||||| ||  |||||||||||||||||||||||||| ||| | | ||||  |||| ||||||| ||    
T  18108357 caatggttaaatgctcttttagttacttatatatagagaaatgtttttattgagattgaaaatgagaaaaacatgc-aaattttcaaaaaatgacaattc 18108259  T
Q  525 gtagaggacaattgt 539  Q
     ||||| ||||||||    
T  18108258 atagagaacaattgt 18108244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 500
Target Start/End: Original strand, 27343160 - 27343211
Alignment:
Q  449 ttacttatatatagagagatttttattgagattgaaaatgagaaaatcattc 500  Q
    ||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  27343160 ttacttatattgagagatatttttattgacattgaaaatgagaaaatcattc 27343211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 26540877 - 26540839
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  26540877 gttgaaagagctttttcagcaatgaagattatcaagact 26540839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 3294213 - 3294281
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
    |||||||||||||||||||||| || |||||||  ||||| |||||||||| || |||||||| ||||||    
T  3294213 tttttattgagattgaaaatga-aatatcattcattatttttaaaatatgataaatcgtagagaacaatt 3294281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 544
Target Start/End: Original strand, 14811437 - 14811517
Alignment:
Q  463 agagatttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaattgtaattg 544  Q
    |||| |||||||||||||||||||||| ||| ||||| |||||||  |||| ||| ||||| |||||||| |||| ||||||    
T  14811437 agaggtttttattgagattgaaaatgaaaaagtcattagatattttcaaaaaatg-caagttgtagaggataattataattg 14811517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 539
Target Start/End: Original strand, 27271928 - 27271999
Alignment:
Q  468 tttttattgagattgaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaattgt 539  Q
    |||| ||||||||||||||||| ||||| |||| |||||| ||||| |||| || ||||| || ||||||||    
T  27271928 ttttgattgagattgaaaatgataaaattattcaatatttttaaaaaatgataaatcgtaaagaacaattgt 27271999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 203804 - 203842
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  203804 gttgaaagagctttttcagcaatgaaaattatcaagact 203842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 516
Target Start/End: Original strand, 17832169 - 17832254
Alignment:
Q  433 ttaaatgattgtctagttacttatat--atagagagatttttattgagattgaaaatgagaaaatcattcgatatttctaaaatat 516  Q
    |||||||||||| |||||||||||||  | || || ||||||||||| | |||||| ||||||| ||||| |||||| || |||||    
T  17832169 ttaaatgattgtttagttacttatattaaaagtgatatttttattgatactgaaaacgagaaaaccattcaatatttttagaatat 17832254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 537
Target Start/End: Complemental strand, 15727034 - 15726879
Alignment:
Q  384 tatgaagattatcaagactcagttgcgaaatcgaatgagtgatcaatggttaaatgattgtctagttacttatatatag--agagatttttattgagatt 481  Q
    |||||| |||||||||| || | ||| |||| ||||||| ||| |  |||||||||||||| |||||| ||||||| ||  | | |||||||||||  ||    
T  15727034 tatgaatattatcaagaatctgatgcaaaattgaatgagagatgatcggttaaatgattgtttagttatttatataaagaaatatatttttattgatttt 15726935  T
Q  482 gaaaatgagaaaatcattcgatatttctaaaatatgacaagtcgtagaggacaatt 537  Q
     ||||| |||||| ||||| |  |||| | ||||||| || |  ||||||||||||    
T  15726934 caaaataagaaaaccattcaaagtttccataatatgaaaaattatagaggacaatt 15726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 494
Target Start/End: Original strand, 43507816 - 43507892
Alignment:
Q  418 atgagtgatcaatggttaaatgattgtctagttacttatatatagagagatttttattgagattgaaaatgagaaaa 494  Q
    ||||| ||| ||||||| ||||||||| ||||||||| |||  ||||||||||||  | |  |||||||||||||||    
T  43507816 atgagagataaatggttgaatgattgtatagttacttttattgagagagattttttataatgttgaaaatgagaaaa 43507892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 15767 - 15805
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  15767 gttgaaagagctttttcagcaatgaagattatcaagact 15805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 135076 - 135038
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  135076 gttgaaagagctttttcagcaatgaagattatcaagact 135038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 197058 - 197096
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  197058 gttgaaagagctttttcagcaatgaagattatcaagact 197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 259862 - 259909
Alignment:
Q  355 actgcaacagttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||| | |||||||||| ||||||||| ||||||||||||||||||    
T  259862 actgcatccgttgaaagagttttttcagcaatgaagattatcaagact 259909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 214383 - 214345
Alignment:
Q  364 gttgaaagagctttttcagctatgaagattatcaagact 402  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  214383 gttgaaagagctttttcaccaatgaagattatcaagact 214345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University