View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20386_low_3 (Length: 418)

Name: NF20386_low_3
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20386_low_3
NF20386_low_3
[»] chr1 (1 HSPs)
chr1 (13-383)||(42758198-42758568)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 42758198 - 42758568
Alignment:
Q  13 attctcatgaaatactcacattggttgatataaatatttcaacataacacataaactgaaacattcaaagatgcatatattttccataacactataacaa 112  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42758198 attctcatgaattactcacattggttcatataaatatttcaacataacacataaactgaaacattcaaagatgcatatattttccataacactataacaa 42758297  T
Q  113 tgcaatccctccttcaaaatcttttcttctttggagaatcttgcacaacaagttaccaagtgacgagaacttgtctagtagaggttgtttgcttccttcc 212  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42758298 tgcaatccctccttcaaaatctcttcttctttggagaatcttgcacaacaagttaccaagtgacgagaacttgtttagtagaggttgtttgcttccttcc 42758397  T
Q  213 atgtgcaaccttttgcctttgtggcaatcaagtagaatctactcacgtctattctacgattgtaattttgcaagttaatttatttggaacaggctcaact 312  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  42758398 atgtgcaacattttacctttgtggcaatcaagtagaatctactcacgtctattctatgattgtaattttgcaagttaatttatttgaaacaagctcaact 42758497  T
Q  313 ccactctatctttgcagttcaaccataaccctcttactactacttgagaatcttgcaattgaaactgatat 383  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||| || ||||||||||| ||||||    
T  42758498 ccactctatctttgcagttcaaccataacgctgttactgctacttgagactcgtgcaattgaaattgatat 42758568  T

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