View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20386_low_5 (Length: 313)
Name: NF20386_low_5
Description: NF20386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20386_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 23855642 - 23855935
Alignment:
| Q |
1 |
tccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccagttttattttcctatctatctaactttatttgtgcaatcagtgtatgg |
100 |
Q |
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| T |
23855642 |
tccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccggttttattttcctatctatctaactttatttgtgcaatcagtgtatgg |
23855741 |
T |
|
| Q |
101 |
ctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23855742 |
ctgctgcagtgaaatctctttttatcactgatgagaaagaacgcgagaagagtcgtaaagaattattcgaggctctgcagtttcttgagaataagctgaa |
23855841 |
T |
|
| Q |
201 |
tgacaagttctttggaagaaaagagattggttttgtggatattgctgctctcttcatcccattattccaacaagtagcagagttgcagttggtc |
294 |
Q |
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| T |
23855842 |
tgacaagttctttggaggagaagagattggttttgtggatattgctgctctcttcatcccattattccaacaagtagcagagttgcagttggtc |
23855935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 23850731 - 23851009
Alignment:
| Q |
1 |
tccatgctagaatttatttaccatgtcactaaatgtaaactttgcttatccagttttattttcctatctatctaactttatt-tgtgcaatcagtgtatg |
99 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||| || | |||||||| |||||| |||||||| | ||| ||||||||||| | |
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| T |
23850731 |
tccatgctagaatttatctaccatgtcactaaatgtgaactttg----tcttgaattattttctaatctatataactttaatctgttcaatcagtgtacg |
23850826 |
T |
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| Q |
100 |
gctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctga |
199 |
Q |
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| T |
23850827 |
attgctgcatggaaatctgtttttatgcctgatgagaaagagcgcgagaaggctcgtgaagaattattcgaggctctgcagtttcttgagaatgagctga |
23850926 |
T |
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| Q |
200 |
atgacaagttctttggaagaaaagagattggttttgtggatattgctgctctcttcatcccattattccaacaagtagcagag |
282 |
Q |
| |
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| ||||||||||||||| || |||| || || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
23850927 |
aggacaagttctttggaggagaagaaataggctttgtggatattgctgctctctttatccctttattccaagaagtagcagag |
23851009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 23853171 - 23853402
Alignment:
| Q |
54 |
ttttattttcctatctatctaacttta-tttgtgcaatcagtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagag |
152 |
Q |
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||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||| ||||||| ||||||| | |||||||| || ||||||||| |
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| T |
23853171 |
ttttattttccgatctatctaaagttaatttgtgcaatcagtgtgtggctgctgcatggaaatctgtttttataccggatgagaaagagcgcgagaaggc |
23853270 |
T |
|
| Q |
153 |
tcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgctgctctc |
252 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || | |||||| | |||||||||||||||||| | |
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| T |
23853271 |
tcgcgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaggagattagctttgtggatattgctgcttcc |
23853370 |
T |
|
| Q |
253 |
ttcatcccattattccaacaagtagcagagtt |
284 |
Q |
| |
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|||||| | ||||| ||| | ||||||||||| |
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| T |
23853371 |
ttcatcactttatttcaagatgtagcagagtt |
23853402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 80 - 296
Target Start/End: Original strand, 23838385 - 23838601
Alignment:
| Q |
80 |
atttgtgcaatcagtgtatggctgctgcagtgaaatctctttttatcactgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgca |
179 |
Q |
| |
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||||||| ||||||||| ||||||||||| || || ||||||| ||||| |||| ||||||||||| | |||||||| |||| ||||||| || |
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| T |
23838385 |
atttgtgaaatcagtgtgtggctgctgcatggatgtcggtttttatgcctgataagaaagaacgcgagaaagctagtgaagaactattgaaggctctaca |
23838484 |
T |
|
| Q |
180 |
gtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgctgctctcttcatcccattattccaacaagtagca |
279 |
Q |
| |
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||||||||||||| || | || ||||| ||||||||| || |||| || || |||||||||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
23838485 |
gtttcttgagaatgagttaaaggacaaattctttggaggacaagaaatcggctttgtggatattgccgctctcttcatccctttattccaagaagtagca |
23838584 |
T |
|
| Q |
280 |
gagttgcagttggtcac |
296 |
Q |
| |
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|||||||||||| |||| |
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| T |
23838585 |
gagttgcagttgttcac |
23838601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 23860992 - 23860873
Alignment:
| Q |
130 |
gatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattg |
229 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||| | ||||||||||||| ||||||||||| ||||||| |||||| |||||| || |||||||| |
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| T |
23860992 |
gatgagaaggagcgccagaagaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagatta |
23860893 |
T |
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| Q |
230 |
gttttgtggatattgctgct |
249 |
Q |
| |
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|||||||||||||||||| |
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| T |
23860892 |
actttgtggatattgctgct |
23860873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 23864496 - 23864419
Alignment:
| Q |
172 |
gctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgctgct |
249 |
Q |
| |
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||||||||| |||| |||||| ||||||| |||||||||||||| || | ||||||||||||||||||||| ||||| |
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| T |
23864496 |
gctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattggttttgtggatatttctgct |
23864419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 23843859 - 23843739
Alignment:
| Q |
129 |
tgatgagaaggaacgcgagaagagtcgtgaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagatt |
228 |
Q |
| |
|
||||||||| || |||||||||| | ||||||| | ||||||||| || |||||||||||| ||||||| ||||||| ||||||| || ||||| || |
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| T |
23843859 |
tgatgagaaagagcgcgagaagaatattgaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagagttt |
23843760 |
T |
|
| Q |
229 |
ggttttgtggatattgctgct |
249 |
Q |
| |
|
||||| |||||||||||| |
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| T |
23843759 |
aactttgtcgatattgctgct |
23843739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 23856911 - 23856835
Alignment:
| Q |
169 |
gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgc |
245 |
Q |
| |
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|||||||| ||| ||||||||||| || |||| ||||||||||||||| | | |||||||| ||||||||||||| |
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| T |
23856911 |
gaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagattggaattgtggatattgc |
23856835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 23840094 - 23840014
Alignment:
| Q |
169 |
gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaagaaaagagattggttttgtggatattgctgct |
249 |
Q |
| |
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|||||||| ||||||||| ||||| ||||||| | |||| ||||||| || ||||| || |||||||||||||||||| |
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| T |
23840094 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct |
23840014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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