View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20387_high_2 (Length: 515)
Name: NF20387_high_2
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 29578661 - 29579142
Alignment:
| Q |
19 |
gtaaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatgaagatcgatt |
118 |
Q |
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| T |
29578661 |
gtaaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatgaagatcgatt |
29578760 |
T |
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| Q |
119 |
ctgtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttgaaatcatctt |
218 |
Q |
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| T |
29578761 |
ctgcgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttgaaatcatctt |
29578860 |
T |
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| Q |
219 |
tgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatgaatttacagcatgagttaagtaatgaaggataacagtgttagttcc |
318 |
Q |
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| T |
29578861 |
tgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttgagcaatgaatttacagcatgagttaagtaatgaaggataacagtgttagttcc |
29578960 |
T |
|
| Q |
319 |
ataccgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggagcttgaaagatcaacaaaagttacatgctctgatgac |
418 |
Q |
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| T |
29578961 |
atatcgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggagcttgaaagatcaacaaaagttacatgctctgatgac |
29579060 |
T |
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| Q |
419 |
gaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtacttgatgaagctgtctgtg |
500 |
Q |
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| T |
29579061 |
gaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtacttgatgaagctgtttgtg |
29579142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 346
Target Start/End: Original strand, 29582833 - 29583174
Alignment:
| Q |
22 |
aatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatgaagatcgattctg |
121 |
Q |
| |
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||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||| |||||| |
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| T |
29582833 |
aatgctttggacgactatctttacaaaatgagtaaagtaatggaggataacaacgttagttccatggtgactcctgcagacaaaacaaagatcaattctg |
29582932 |
T |
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| Q |
122 |
tgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttgaaatcatctttga |
221 |
Q |
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| T |
29582933 |
caattatgaacggaaaaagtttgattgataatcatggcaaccagcacaaagaagcatgcgtgtttgtggactttttgaaggagcttcaaggcatctttga |
29583032 |
T |
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| Q |
222 |
atcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatga-----------------atttacagcatgagttaagtaatgaaggata |
304 |
Q |
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| T |
29583033 |
ggcaatgttaaacaagatcaacaaaggttccaagattaagttagagcaatgaattctttagacgactacatttacaacatgagttaagtaatgaaggata |
29583132 |
T |
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| Q |
305 |
acagtgttagttccataccgactcttggagacaaagtagtgc |
346 |
Q |
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| T |
29583133 |
acagtgttggttctattctgagtcttggagacaaaatagtgc |
29583174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 8544813 - 8544616
Alignment:
| Q |
21 |
aaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatgaagatcgattct |
120 |
Q |
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| T |
8544813 |
aaatgctttggagtattatctttacaatgtgaggaaagtaatgaaggatgattgtgttaattccaagctcgcccctgtagacaaaatgaatatcaattct |
8544714 |
T |
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| Q |
121 |
gtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttgaaatcatctttg |
220 |
Q |
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| T |
8544713 |
gcaatgataaagggaaaaagtttgattgataa------caaccaacaggaagatgcatttgtgtttgtggactttttgaaggagcttgagagcatctttg |
8544620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 8580878 - 8580815
Alignment:
| Q |
20 |
taaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttc |
83 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
8580878 |
taaatgctttggacgattatctttacaaagtgaggaaagtaatggaggataattgtgttagttc |
8580815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 8601143 - 8601083
Alignment:
| Q |
29 |
tggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgct |
89 |
Q |
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|||| ||||||||||||| | ||| ||||||||| ||||| | ||||||||||||||||| |
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| T |
8601143 |
tggatgattatctttacactatgagaaaagtaatgaaggatgatagtgttagttccatgct |
8601083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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