View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20387_high_3 (Length: 486)
Name: NF20387_high_3
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 45851392 - 45851858
Alignment:
| Q |
1 |
ctcacatacactgttggagttaaattgcaattcattcaattaacttgtgaaatccagacagggggttgtatcgataatcaataatcatgacaaatacgaa |
100 |
Q |
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| T |
45851392 |
ctcacatacaccgttggagttaaattgcaattcattcaattaacttgtgaaatccaggcagggggttgtatcaataatcaataatcatgacaaatacgaa |
45851491 |
T |
|
| Q |
101 |
ttatttcatttggacaattatagtatgtatatggcaggaactttggataatgccgcattaatccctctaatgcttttgcttaattagtgaggcccataag |
200 |
Q |
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| T |
45851492 |
ttatttcatttggacaattatagtat----atggcaggaactttggataatgccgcattaatccctctaatgcttttgcttaattagtgaggcccataag |
45851587 |
T |
|
| Q |
201 |
catatttggctctattgtttgtcataatctgacaatacacacatctttgcgatatatacattatgaagcttccaaagtggagcaattcaacaagccacat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45851588 |
catatttggctttattgtttgtcataatctgacaatacacacatctttgcgatatatacattatgaagcttccaaagtggagcaattcaacaagccacat |
45851687 |
T |
|
| Q |
301 |
tgttttgacatagatgatttaattatgtgatttgattacttaacgataaagtatacagtaattacaaatccaaaaccagttgtgtcttgtcaccaaactt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45851688 |
tgttttgacatagatgatttaattatgtgatttgattacttaacgataaagtatacagtaattacaaatccaaaaccagttgtgtcttgtcactaaactt |
45851787 |
T |
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| Q |
401 |
aaatgattttggcttataacttaattatttcttgttgacaaaatgattttggcttaattataaattgattg |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45851788 |
aaatgattttggcttataacttaattatttcttgttgacaaaatgattttggcttaattataaattgattg |
45851858 |
T |
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