View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20387_high_4 (Length: 434)
Name: NF20387_high_4
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32375977 - 32376151
Alignment:
| Q |
1 |
tcatcagttctggtaaaaatctactgtaattgtatggttctttaagtagtttcatacttaatccatttattattaggttaaatcatttacttgaggcctc |
100 |
Q |
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| T |
32375977 |
tcattagttctggtaaaaatctactgtaattgtatggttccttaagtagtttcatacttaatccatttattataaggttaaatcatttacttgaggcctc |
32376076 |
T |
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| Q |
101 |
ctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
175 |
Q |
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| T |
32376077 |
ctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
32376151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 122 - 421
Target Start/End: Original strand, 32364347 - 32364629
Alignment:
| Q |
122 |
cagcaagtaaattatggttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
221 |
Q |
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| T |
32364347 |
cagcaggtaaattttagttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
32364446 |
T |
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| Q |
222 |
acggattcataagctgtttttaacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctac |
321 |
Q |
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| T |
32364447 |
acggatttataaactgtttttaacatatttatacaaatcatttaggacaaattatgaaaatagtgtt------acaggtcacaac-cataatatatcaac |
32364539 |
T |
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| Q |
322 |
cctcaaagagtttcagtagaagaaacatattttaagattgtaaaactaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
421 |
Q |
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| T |
32364540 |
tctcaaagagtttcagtagaaggaacatacattaagattgtaaaactaagtt----------attctaacatgtatttcatatgattttcttgtaaaaag |
32364629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 242 - 421
Target Start/End: Original strand, 32376147 - 32376330
Alignment:
| Q |
242 |
taacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctaccctcaaagagtttcagtaga |
341 |
Q |
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| T |
32376147 |
taacatatttgtataaatcatgtagggcaaataatgaaaatagtgttacattcacaggtcacaacatttaatatatctaccctcaaagagtttcagtaga |
32376246 |
T |
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| Q |
342 |
agaaacatattttaagattgtaaaac----taagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
421 |
Q |
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| T |
32376247 |
aggaacatattttaagattgtaaaactaattaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
32376330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 32364244 - 32364303
Alignment:
| Q |
7 |
gttctggtaaaaatctactgtaattgtat--ggttctttaagtagtttcatacttaatcc |
64 |
Q |
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| T |
32364244 |
gttctggtaaatatctaccgtaattgtatatggttccataagtagtttcatacttaatcc |
32364303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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