View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20387_high_7 (Length: 377)
Name: NF20387_high_7
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_high_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 3575706 - 3576068
Alignment:
| Q |
18 |
atattatcatcttgtc---taatgtaataagcacatattttataggaagaaggatgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatga |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575706 |
atattatcatcttgtcgtctaatgtaataagcacatattttataggaagaaggatgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatga |
3575805 |
T |
|
| Q |
115 |
ggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaatcagagcttgaatccccaagcagaatttcttctcatcacccttataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575806 |
ggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaatcagagcttgaatccccaagcagaatttcttctcatcacccttataa |
3575905 |
T |
|
| Q |
215 |
tgcatcataccaacatcaacaacagcattacccttgcaaacaagagttggatcaattgcaatacaatatacacattaataataatgatgctaataatttc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575906 |
tgcatcataccaacatcaacaacagcattatccttgcaaacaagagttggatcaattgcaatacaatatacacattaataataatgatgctaataatttc |
3576005 |
T |
|
| Q |
315 |
ctacaacttccacaactagaaaacctcaattctcctatgcaatgctcattatcaacacattca |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3576006 |
ctacaacttccacaactagaaaacctcaattctcctatgcaatgctcattatcaacacattca |
3576068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University