View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20387_low_1 (Length: 542)
Name: NF20387_low_1
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 203 - 528
Target Start/End: Complemental strand, 36575740 - 36575415
Alignment:
| Q |
203 |
aggacctaatctattccttttcttatagagtagtatnnnnnnntacattttctccatgtatccgatgaacaataaggacaaggaagtgtgatgattggtt |
302 |
Q |
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| T |
36575740 |
aggacctaatctattccttttcttatagagtagtataaaaaaatacattttctccaagtatccgatgaacaataaggacaaggaagtgtgatgattggtt |
36575641 |
T |
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| Q |
303 |
aaactttctagtccatatccctttttgccgcagttgatcccgtgatgatcaattaacattaacgtccaattttaaccaaacttacaacttccaacttcta |
402 |
Q |
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| T |
36575640 |
aaactttctagtccatatccctttttgccgcagttgatcccgtgatgatcaattaacattaacgtccaattttaaccaaacttacaacttccaacttcta |
36575541 |
T |
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| Q |
403 |
tataaacactatgtattttcctgccgttataaaccatttttgtaatcctccatacactgccaaaagggatggcttcaacttccaccaccacattatattt |
502 |
Q |
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| T |
36575540 |
tataaacactatgtattttcctgccgttataaaccatttttgtaatcctccatacactgccaaaagggatggcttcaacttccaccaccacattatattt |
36575441 |
T |
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| Q |
503 |
acactttctgttgttaatgttaacat |
528 |
Q |
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| T |
36575440 |
acactttctgttgttaatgttaacat |
36575415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 36575923 - 36575800
Alignment:
| Q |
19 |
ttcatgtggttctttaatttctacttttgtcctgtttattttacttgttcaagtcgttaatccatatgtttcgtgctcgtagcatattttgtgggcggat |
118 |
Q |
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| T |
36575923 |
ttcatgtggttctttaatttctacttttgtcctgtttattttacttgttcaagtcgttaatccatatgtttcgtgctcgtagcatattttgtgggcggat |
36575824 |
T |
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| Q |
119 |
agagcttttgcccctggtaatcaa |
142 |
Q |
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| T |
36575823 |
agagcttttgcccctggtaatcaa |
36575800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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