View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20387_low_10 (Length: 349)
Name: NF20387_low_10
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20387_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 7717418 - 7717098
Alignment:
| Q |
10 |
tggaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattgg |
109 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717418 |
tggaactgtctgcgtgtaattccatcctgtcaagttcgagacgatttcgt-tgatgaatcttaccaacacaaagtcaacgaagattccatctagtattgg |
7717320 |
T |
|
| Q |
110 |
aaggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttg |
209 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |
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| T |
7717319 |
aaggatgaaacatctaagatattgtgatctttctcattgttataaggttgaagagctcc-aaggtctataactcaattatttaacttggagactcttttg |
7717221 |
T |
|
| Q |
210 |
ctcaattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttcta |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717220 |
ctcaattcgtgtagtcacttgagagagttgcccaaagatatttggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttcta |
7717121 |
T |
|
| Q |
310 |
tgacacttggaataggaaagatg |
332 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
7717120 |
tgccacttggaataggaaagatg |
7717098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7721259 - 7720928
Alignment:
| Q |
1 |
aaagtctattggaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7721259 |
aaagtctattggaattgtctgcttgtaattccattctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatc |
7721160 |
T |
|
| Q |
101 |
tagtattggaaggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||| |||| ||| |||||| |||||||||||||| |||||| ||||| ||||||||||| |
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|
| T |
7721159 |
tagtattggaaggatgaaacatctaagatatcttgacctttcttgttgtgatatggttgaggagctcccaaggtctataactgaattaattaacttggag |
7721060 |
T |
|
| Q |
201 |
actcgtttgctcaattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataact |
300 |
Q |
| |
|
|||| ||| ||||||| ||| | | ||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||| |||| || ||| |
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| T |
7721059 |
actcttttactcaatttttgttctaaattgagagagttgcccaaagatctttagaagttggtaagtcttcgacatcttgagttggattattgccatgact |
7720960 |
T |
|
| Q |
301 |
taacttctatgacacttggaataggaaagatg |
332 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |
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|
| T |
7720959 |
taacttctatgccaattggaataggaaagatg |
7720928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 7521219 - 7521539
Alignment:
| Q |
12 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | | |||||||| ||||||||| ||||||| | |
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|
| T |
7521219 |
gaattgtctgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttaatgtattcaacgaatattccatcttgtattggta |
7521318 |
T |
|
| Q |
112 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
211 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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|
| T |
7521319 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttaaggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7521418 |
T |
|
| Q |
212 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatg |
311 |
Q |
| |
|
|||| |||| | | ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7521419 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttggtaattcttagacatcttgagttggatgattgtgataacttaacttctatg |
7521518 |
T |
|
| Q |
312 |
acacttggaataggaaagatg |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7521519 |
ccacttggaataggaaagatg |
7521539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 7495561 - 7495881
Alignment:
| Q |
12 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | || || | |||||| ||||||||| ||||||| | |
|
|
| T |
7495561 |
gaattgtctgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcatgaatttaacgaatattccatcttgtattggta |
7495660 |
T |
|
| Q |
112 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
211 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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|
| T |
7495661 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7495760 |
T |
|
| Q |
212 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatg |
311 |
Q |
| |
|
|||| |||| | | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
7495761 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttggtaagtcttagacatcttgagttggatctttgtcataacttaacttctatg |
7495860 |
T |
|
| Q |
312 |
acacttggaataggaaagatg |
332 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
7495861 |
ccacgtggaataggaaagatg |
7495881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 7127973 - 7127653
Alignment:
| Q |
12 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
111 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||| | || || | |||||| ||||||||| ||||||| | |
|
|
| T |
7127973 |
gaattatctgctagtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcatgaatttaacgaatattccatcttgtattggta |
7127874 |
T |
|
| Q |
112 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
211 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
|
|
| T |
7127873 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7127774 |
T |
|
| Q |
212 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatg |
311 |
Q |
| |
|
|||| |||| | | |||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7127773 |
caataggtgttctaaattgaaagagttgcccaaagatctttggaagttggtaagccttagacatcttgagttggatgattgtgataacttaacttctatg |
7127674 |
T |
|
| Q |
312 |
acacttggaataggaaagatg |
332 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
7127673 |
ccacgtggaataggaaagatg |
7127653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 7529284 - 7529604
Alignment:
| Q |
12 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
111 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | || | |||||| ||||||||| ||||||| | |
|
|
| T |
7529284 |
gaattgtgtgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcctgaatttaacgaatattccatcttgtattggta |
7529383 |
T |
|
| Q |
112 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
211 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
|
|
| T |
7529384 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7529483 |
T |
|
| Q |
212 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatg |
311 |
Q |
| |
|
|||| |||| | | ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7529484 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttagtaagtcttagacatcttgagttggattattgtcataacttaacttctatg |
7529583 |
T |
|
| Q |
312 |
acacttggaataggaaagatg |
332 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
7529584 |
ccacgtggaataggaaagatg |
7529604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 7483165 - 7483482
Alignment:
| Q |
12 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
111 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| | | |||| ||| ||||||||| ||||||| | |
|
|
| T |
7483165 |
gaattgtctgcctgtaattccatcatgtcaagttctagacgatttcgtgtgctgaatctta---acatagaatcaaagaatattccatcttgtattggta |
7483261 |
T |
|
| Q |
112 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
211 |
Q |
| |
|
| |||||||||||||| |||||||| |||||| ||||| | |||||| ||||||||||||||||||||| | ||| ||||||||||||||| ||| || |
|
|
| T |
7483262 |
gaatgaaacatctaaggtatcttgacctttcttattgtagaatggttgaggagctcccaaggtcaataactgatttagttaacttggagactcttttact |
7483361 |
T |
|
| Q |
212 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatg |
311 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||| | ||||| | |||||| ||||| ||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
7483362 |
taattggtgtactcacttgaaagagttgcccaaagatctttggaaatgggtaagacttaggcatcttgagttggattattgtgatgacttaacttctatg |
7483461 |
T |
|
| Q |
312 |
acacttggaataggaaagatg |
332 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
7483462 |
ccacgtggaataggaaagatg |
7483482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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