View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20387_low_11 (Length: 339)

Name: NF20387_low_11
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20387_low_11
NF20387_low_11
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-339)||(200054-200384)
[»] chr4 (11 HSPs)
chr4 (1-336)||(28948437-28948765)
chr4 (2-339)||(22703082-22703403)
chr4 (2-339)||(22990714-22991035)
chr4 (1-117)||(22698733-22698842)
chr4 (1-117)||(22981688-22981797)
chr4 (1-117)||(22995275-22995384)
chr4 (38-121)||(56560508-56560591)
chr4 (38-121)||(24036214-24036297)
chr4 (37-121)||(16565539-16565623)
chr4 (37-121)||(15618844-15618928)
chr4 (42-87)||(52056997-52057042)
[»] chr8 (6 HSPs)
chr8 (1-117)||(19648194-19648303)
chr8 (38-121)||(193387-193470)
chr8 (38-121)||(720991-721074)
chr8 (38-121)||(882098-882181)
chr8 (38-121)||(30983223-30983306)
chr8 (38-121)||(44240122-44240205)
[»] chr3 (4 HSPs)
chr3 (1-117)||(7011653-7011762)
chr3 (38-121)||(51125383-51125466)
chr3 (38-121)||(52692542-52692625)
chr3 (37-94)||(16246819-16246876)
[»] chr1 (6 HSPs)
chr1 (1-117)||(4345989-4346098)
chr1 (38-121)||(46407488-46407571)
chr1 (38-121)||(50978939-50979022)
chr1 (38-114)||(35606336-35606412)
chr1 (37-121)||(35569906-35569990)
chr1 (39-79)||(50979027-50979067)
[»] chr5 (5 HSPs)
chr5 (1-117)||(22809984-22810093)
chr5 (38-121)||(33232457-33232540)
chr5 (38-121)||(7072032-7072115)
chr5 (37-121)||(22481515-22481599)
chr5 (178-224)||(22808657-22808703)
[»] chr2 (6 HSPs)
chr2 (38-121)||(13895999-13896082)
chr2 (38-121)||(14036616-14036699)
chr2 (1-117)||(23360948-23361058)
chr2 (38-121)||(14380107-14380190)
chr2 (37-121)||(5916944-5917028)
chr2 (37-121)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (38-121)||(21515703-21515786)
chr6 (38-121)||(30019220-30019303)
chr6 (37-121)||(16547456-16547540)
chr6 (36-114)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (36-121)||(37638703-37638788)
chr7 (36-121)||(10372714-10372799)
chr7 (37-82)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (43-114)||(6607-6678)


Alignment Details
Target: scaffold0009 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 200054 - 200384
Alignment:
Q  2 taattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgat 101  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  200054 taattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgat 200146  T
Q  102 aataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 201  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200147 aataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 200246  T
Q  202 aggaagaggcagtccagttaacatnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacc 301  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  200247 aggaagaggcagtccagttaacataaaaaaagcctagaaagtctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacc 200346  T
Q  302 cccagccgtagcaggttagcaggccaggaacagcacct 339  Q
    ||||||||||||||||||||||||||||||||||||||    
T  200347 cccagccgtagcaggttagcaggccaggaacagcacct 200384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 28948437 - 28948765
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  28948437 ttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 28948529  T
Q  101 taataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccag 200  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28948530 taataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtttgcaaaccgaaacaccag 28948629  T
Q  201 aaggaagaggcagtccagttaacatnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactac 300  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  28948630 aaggaagaggcagtccagttaacataaaaaaatcctagaaagtctagaaagcaattacagagacaaacaaaaccaaccaggcccttggccaaaaaactac 28948729  T
Q  301 ccccagccgtagcaggttagcaggccaggaacagca 336  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28948730 ccccaaccgtagcaggttagcaggccaggaacagca 28948765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 22703082 - 22703403
Alignment:
Q  2 taattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgat 101  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  22703082 taattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgat 22703174  T
Q  102 aataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 201  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703175 aataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 22703274  T
Q  202 aggaagaggcagtccagttaacatnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacc 301  Q
    ||||||||||||||||||||||||           | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22703275 aggaagaggcagtccagttaacataa---------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacc 22703365  T
Q  302 cccagccgtagcaggttagcaggccaggaacagcacct 339  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22703366 cccagccgtagcaggttagcaggccaggaacagcacct 22703403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 22991035 - 22990714
Alignment:
Q  2 taattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgat 101  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  22991035 taattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgat 22990943  T
Q  102 aataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 201  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990942 aataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaaccgaaacaccaga 22990843  T
Q  202 aggaagaggcagtccagttaacatnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttggccaaaaaactacc 301  Q
    ||||||||||||||||||||||||           | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22990842 aggaagaggcagtccagttaacataa---------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttggccaaaaaactacc 22990752  T
Q  302 cccagccgtagcaggttagcaggccaggaacagcacct 339  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22990751 cccagccgtagcaggttagcaggccaggaacagcacct 22990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22698842 - 22698733
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22698842 ttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 22698750  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  22698749 taataattgaatacctc 22698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22981688 - 22981797
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22981688 ttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 22981780  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  22981781 taataattgaatacctc 22981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22995275 - 22995384
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22995275 ttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 22995367  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  22995368 taataattgaatacctc 22995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 56560591 - 56560508
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  56560591 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 56560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 24036214 - 24036297
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  24036214 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 24036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 16565623 - 16565539
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| | ||| ||||||    
T  16565623 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgattacttcatta 16565539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 15618928 - 15618844
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||| | || |||| ||||||| ||||| ||||| ||||||    
T  15618928 aattgcaaatctattcttccataccccaaaagttttttcaattgtgcatcctaaacttgagtgatagtaattgaatacttcatta 15618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 52056997 - 52057042
Alignment:
Q  42 caaatctattcttccatacaccaaaagttctttctattgtgcacct 87  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  52056997 caaatctgttcttccataccctaaaagttatttctattgtgcacct 52057042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 19648303 - 19648194
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  19648303 ttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 19648211  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  19648210 taataattgaatacctc 19648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 193470 - 193387
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  193470 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 721074 - 720991
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  721074 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 882181 - 882098
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  882181 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 30983223 - 30983306
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30983223 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 44240205 - 44240122
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  44240205 attgcaaatatgttcttccataccccaaaagttctttctattgtgtatcttaaacttgagtgataataattaaatacttcatta 44240122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 7011762 - 7011653
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  7011762 ttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 7011670  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  7011669 taataattgaatacctc 7011653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 51125383 - 51125466
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  51125383 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 51125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 52692625 - 52692542
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  52692625 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 52692542  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 16246819 - 16246876
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 94  Q
    |||||||||||||||||||||| |   |||||||||||| |||||||| |||| ||||    
T  16246819 aattgcaaatctattcttccatgccttaaaagttctttcaattgtgcatcttaaactt 16246876  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4346098 - 4345989
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  4346098 ttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 4346006  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  4346005 taataattgaatacctc 4345989  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 46407571 - 46407488
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  46407571 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 46407488  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 50978939 - 50979022
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  50978939 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 50979022  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 35606412 - 35606336
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 114  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  35606412 attgcaaatctgttcttccataccccaacagttctttctattgtgcaccttaaacttgagtgataataattaaatac 35606336  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 35569906 - 35569990
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  35569906 aattgcaaatttattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 35569990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 50979027 - 50979067
Alignment:
Q  39 ttgcaaatctattcttccatacaccaaaagttctttctatt 79  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  50979027 ttgcaaatctgttcttccataccccaaaagttctttctatt 50979067  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22810093 - 22809984
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtga 100  Q
    |||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22810093 ttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtga 22810001  T
Q  101 taataattaaatacctc 117  Q
    |||||||| ||||||||    
T  22810000 taataattgaatacctc 22809984  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 33232540 - 33232457
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  33232540 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 33232457  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 7072032 - 7072115
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||| ||||||    
T  7072032 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaatttgagtgataataattaaatacttcatta 7072115  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 22481599 - 22481515
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  22481599 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 22481515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 22808703 - 22808657
Alignment:
Q  178 atgtctgcaaaccgaaacaccagaaggaagaggcagtccagttaaca 224  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  22808703 atgtctgcagaccgaaacaccagaaggaagaggcagtccaattaaca 22808657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 13896082 - 13895999
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  13896082 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 13895999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 14036699 - 14036616
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  14036699 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 14036616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 23360948 - 23361058
Alignment:
Q  1 ttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaa-gttctttctattgtgcaccttacacttaagtg 99  Q
    |||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||| |||||||||||||||||||||| |||| ||||    
T  23360948 ttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattctttcatacaccaaaaagttctttctattgtgcaccttaaacttgagtg 23361040  T
Q  100 ataataattaaatacctc 117  Q
    ||||||||| ||||||||    
T  23361041 ataataattgaatacctc 23361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 14380190 - 14380107
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  14380190 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 14380107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 5916944 - 5917028
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  5916944 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 5917028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 36311681 - 36311597
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  36311681 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 36311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 21515703 - 21515786
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  21515703 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 21515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 30019303 - 30019220
Alignment:
Q  38 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30019303 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30019220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 16547540 - 16547456
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  16547540 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 16547456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 17830767 - 17830845
Alignment:
Q  36 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 114  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  17830767 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 17830845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 37638788 - 37638703
Alignment:
Q  36 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  37638788 aaattgcaaatctattcttccatacaccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 37638703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 10372714 - 10372799
Alignment:
Q  36 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 121  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||  ||||| ||||||    
T  10372714 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaatcgaatacttcatta 10372799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 12963387 - 12963342
Alignment:
Q  37 aattgcaaatctattcttccatacaccaaaagttctttctattgtg 82  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  12963387 aattgcaaatctattcttccataccccaaaagttctttcaattgtg 12963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 6607 - 6678
Alignment:
Q  43 aaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 114  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  6607 aaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 6678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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