View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20387_low_6 (Length: 422)

Name: NF20387_low_6

Description: NF20387

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20387_low_6

[»] chr8 (2 HSPs)

[»] chr4 (3 HSPs)

Alignment Details

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 251 - 422

Target Start/End: Complemental strand, 12933984 - 12933813

Alignment:

Q	251	tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta	349	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|
T	12933984	tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt	12933885	T

Q	350	cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatc	422	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	12933884	ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatc	12933813	T

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Target: chr8; HSP #2

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 364 - 401

Target Start/End: Complemental strand, 36999974 - 36999937

Alignment:

Q	364	ggttgctccatataaatctcctcttccaaatctccatg	401	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	36999974	ggttgctccatataaatctcctcttccaagtcaccatg	36999937	T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 251 - 422

Target Start/End: Original strand, 28608621 - 28608792

Alignment:

Q	251	tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta	349	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|
T	28608621	tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt	28608720	T

Q	350	cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatc	422	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	28608721	ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatc	28608792	T

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Target: chr4; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 274 - 422

Target Start/End: Complemental strand, 14177231 - 14177083

Alignment:

Q	274	taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc	372	Q
		\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	14177231	taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc	14177133	T

Q	373	atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatc	422	Q
		\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	14177132	atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatc	14177083	T

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Target: chr4; HSP #3

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 363 - 416

Target Start/End: Complemental strand, 20706234 - 20706182

Alignment:

Q	363	tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt	416	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|
T	20706234	tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt	20706182	T

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