View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20387_low_7 (Length: 393)

Name: NF20387_low_7
Description: NF20387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20387_low_7
NF20387_low_7
[»] chr4 (4 HSPs)
chr4 (93-380)||(42083066-42083353)
chr4 (165-380)||(42086665-42086870)
chr4 (19-72)||(42083014-42083067)
chr4 (43-140)||(42086520-42086611)
[»] chr7 (3 HSPs)
chr7 (176-227)||(22284482-22284533)
chr7 (170-216)||(37603915-37603961)
chr7 (159-223)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (159-214)||(6933139-6933194)
chr2 (176-221)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (170-216)||(30922528-30922574)
chr8 (165-216)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (176-212)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 93 - 380
Target Start/End: Original strand, 42083066 - 42083353
Alignment:
Q  93 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42083066 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaa 42083165  T
Q  193 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatctta 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42083166 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatctta 42083265  T
Q  293 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42083266 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctct 42083353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 380
Target Start/End: Original strand, 42086665 - 42086870
Alignment:
Q  165 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 264  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  || |||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtc-gtgct 42086759  T
Q  265 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac 364  Q
    ||||||||||||||    | ||| ||| |||||||||| ||| ||||||| || | ||||||||||||||| | ||||  | ||||||| |||| || ||    
T  42086760 acatagctttcaaa----tcataccttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac 42086854  T
Q  365 ttatgatttggcctct 380  Q
    |  |||||||||||||    
T  42086855 tattgatttggcctct 42086870  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 42083014 - 42083067
Alignment:
Q  19 gcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagca 72  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42083014 gcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagca 42083067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 42086520 - 42086611
Alignment:
Q  43 agtgtaccgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta 140  Q
    ||||||| |||||||  ||||||||||||||  ||||||||||| |||||||||||||||      ||||||||||||||||||||| ||||||||||    
T  42086520 agtgtactgacatactgaaacatctcagcaagaggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta 42086611  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  176 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 227  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  170 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 216  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  159 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 223  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  159 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 214  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  176 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 221  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  170 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 216  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  165 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 216  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  176 gataataatttgaaaaatggaagaaattgaatgtaac 212  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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