View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_high_11 (Length: 247)
Name: NF20388_high_11
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 45073296 - 45073134
Alignment:
| Q |
79 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
178 |
Q |
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| T |
45073296 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattattccaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
45073197 |
T |
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| Q |
179 |
gaagtgtattaaatgtactaattgcttttaggaaatgttaaatttcagtttaattagtattat |
241 |
Q |
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| T |
45073196 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtattat |
45073134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45073399 - 45073323
Alignment:
| Q |
1 |
ttgctggtccattgactaccacctccattgactactgccattactcgtggttctccttttcgtttatttgtttcctt |
77 |
Q |
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| T |
45073399 |
ttgctggtccattgactaccacctccattgactactgccattactcgtggttctcctttttgtttatttgtttcctt |
45073323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 8880060 - 8879949
Alignment:
| Q |
79 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
178 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
8880060 |
tcgatatataattagtattccagttgaggtaagtaaagtccgacaaattattacaatcaaggatcaaactcatattctaccaaataatttaagcttaact |
8879961 |
T |
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| Q |
179 |
gaagtgtattaa |
190 |
Q |
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| T |
8879960 |
gaagtgtattaa |
8879949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 8883870 - 8883820
Alignment:
| Q |
101 |
attgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcat |
151 |
Q |
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| T |
8883870 |
attgacgtaagtcaagtctgataaactatttcaatcaaggatcgaactcat |
8883820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 8880154 - 8880122
Alignment:
| Q |
45 |
tcgtggttctccttttcgtttatttgtttcctt |
77 |
Q |
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| T |
8880154 |
tcgtggttctccttttcgtttatttatttcctt |
8880122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8884034 - 8884006
Alignment:
| Q |
1 |
ttgctggtccattgactaccacctccatt |
29 |
Q |
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| T |
8884034 |
ttgctggtccattgactaccacctccatt |
8884006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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