View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20388_high_15 (Length: 229)

Name: NF20388_high_15
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20388_high_15
NF20388_high_15
[»] chr5 (10 HSPs)
chr5 (25-208)||(8529708-8529891)
chr5 (27-212)||(8536268-8536453)
chr5 (27-208)||(1599454-1599635)
chr5 (27-206)||(9073886-9074065)
chr5 (27-111)||(8637753-8637837)
chr5 (29-111)||(2873692-2873774)
chr5 (27-111)||(8547291-8547375)
chr5 (27-111)||(8645098-8645182)
chr5 (29-111)||(2844246-2844328)
chr5 (29-111)||(2856079-2856161)
[»] chr4 (1 HSPs)
chr4 (29-208)||(9443869-9444048)
[»] chr7 (2 HSPs)
chr7 (27-208)||(48361006-48361187)
chr7 (25-111)||(35780709-35780795)
[»] scaffold0627 (1 HSPs)
scaffold0627 (29-111)||(5483-5565)
[»] chr6 (1 HSPs)
chr6 (29-111)||(16717196-16717278)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 8529891 - 8529708
Alignment:
Q  25 cctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttagg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8529891 cctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagg 8529792  T
Q  125 gataaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagt 208  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529791 gataaaagagaccagatcaataatgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagt 8529708  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 8536453 - 8536268
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttaggga 126  Q
    |||||||||||||||  || ||| | ||||||||||||||||||||| |||| || || ||||  ||||| |||||||||||||||||||||||||||||    
T  8536453 tgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctcagatcatttaggga 8536354  T
Q  127 taaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttata 212  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8536353 taaaagagaccagatcaataatgaatccaagcgaccttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttata 8536268  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 1599454 - 1599635
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttaggga 126  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||| |||  || |||||||| ||||| |||||||||||||||||||||||||||||    
T  1599454 tgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcctatgttcaagcttcctctcagatcatttaggga 1599553  T
Q  127 taaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagt 208  Q
    |||||| ||| ||||||||||||||||||||  ||||||||||||||| ||||||||||| |||||||| || |||||||||    
T  1599554 taaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacagt 1599635  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 9073886 - 9074065
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttaggga 126  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  9073886 tgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctcatatcatttaggga 9073985  T
Q  127 taaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaaca 206  Q
    |||||||  | |||||| |||||||| |||   |||| |||||||||| ||||||||||| ||||||||| | |||||||    
T  9073986 taaaagaagcgagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaaca 9074065  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 8637837 - 8637753
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||    
T  8637837 tgtaccttcttgagtgtgatcatgaaaagtttgagattggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct 8637753  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 2873692 - 2873774
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||| || |||||||  ||||||||| ||||||||||    
T  2873692 taccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct 2873774  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 8547291 - 8547375
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||| ||||||||| |||||||| |||||  ||||||||||||||||||| || |||||||  ||||||||||||||||||||    
T  8547291 tgtaccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctct 8547375  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 8645182 - 8645098
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||||||||||| || ||||| |||||| | ||||||||||||| ||  |||||||||||||||||||| |||||||||||    
T  8645182 tgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgcacctatatttaagcttcctct 8645098  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 2844246 - 2844328
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| ||||| || |||||||  ||||||||| ||||||||||    
T  2844246 taccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct 2844328  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 2856079 - 2856161
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| ||||| || |||||||  ||||||||| ||||||||||    
T  2856079 taccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct 2856161  T

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Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 9444048 - 9443869
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttagggata 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444048 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggata 9443949  T
Q  129 aaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagt 208  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  9443948 aaagagaccagatcaatattgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacaacgacaacagt 9443869  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 48361006 - 48361187
Alignment:
Q  27 tgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctctcagatcatttaggga 126  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||    
T  48361006 tgtaccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctcagatcatttaggga 48361105  T
Q  127 taaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagt 208  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||| ||||||||||| || ||||| || |||||||||    
T  48361106 taaaagagacgatatcaataatgaatccaagcacccttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagt 48361187  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 35780795 - 35780709
Alignment:
Q  25 cctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||| ||||||||||||| |||||||| ||||||||| ||||||| |||||||  || |||||||  || ||||| |||||||||||    
T  35780795 cctgcaccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctct 35780709  T

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Target: scaffold0627 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 5565 - 5483
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    ||||||||||| ||||| ||| | |||||||||||||||||||||||||| || |||||||  |||||||||| |||| ||||    
T  5565 taccttcttgaatgcgatcctaaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttactct 5483  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 16717278 - 16717196
Alignment:
Q  29 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcacgtcaagcttgcacctatattcaagcttcctct 111  Q
    |||||||| |||||||| || || |||||||||||||||||||||||||| || || ||||  ||||||||||  ||||||||    
T  16717278 taccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctct 16717196  T

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