View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_high_4 (Length: 355)
Name: NF20388_high_4
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 49110190 - 49110524
Alignment:
| Q |
10 |
ataattctaggaaacaaatttgcattgcagatttagggtgctccacaggaccaaacaccttcattgcaattcaatgcattatagaagcaatagaactcca |
109 |
Q |
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| T |
49110190 |
ataattctaggaaacaaatttgcattgcagatttagggtgctccacaggaccaaacaccttcattgcaattcaatgcattatagaagcaattgaactcca |
49110289 |
T |
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| Q |
110 |
atacaagtcacaaggccttgctatcccagagtttcaagttttcttcaatgaccaaatttcaaatgatttcaacacactcttcaaaaagcttccatcaaac |
209 |
Q |
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| T |
49110290 |
atacaagtcacaaggccttgctatcccagagtttcaagttttcttcaatgaccaaatttcaaatgatttcaacacactcttcaaaaagcttccatcaaac |
49110389 |
T |
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| Q |
210 |
cgaaactactttgcagccggtgttcctggttctttctatggaagattatttccaaaggaaagccttaatgtagttcattcatctgcatcactaaattgga |
309 |
Q |
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| T |
49110390 |
cgaaactactttgcagccggtgttcctggttctttctatggaagattatttccaaaggaaagccttaatgtagttcattcatctgcatcactaaattgga |
49110489 |
T |
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| Q |
310 |
tttctaaggttcctaaagagatcacagacagaagt |
344 |
Q |
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| T |
49110490 |
tttctaaggttcctaaagagatcacagacagaagt |
49110524 |
T |
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