View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20388_low_12 (Length: 245)
Name: NF20388_low_12
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7030887 - 7030667
Alignment:
| Q |
18 |
ggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7030887 |
ggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttct |
7030788 |
T |
|
| Q |
118 |
taaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaagaatttttcttaacctcaaactgtttgttcc |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7030787 |
taaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaataatttttcttaacctcaaactgtttgttcc |
7030688 |
T |
|
| Q |
218 |
acatctttctgattcttctct |
238 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
7030687 |
acatctttctgattcttctct |
7030667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7036596 - 7036376
Alignment:
| Q |
18 |
ggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttct |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
7036596 |
ggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttct |
7036497 |
T |
|
| Q |
118 |
taaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaagaatttttcttaacctcaaactgtttgttcc |
217 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||| |
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| T |
7036496 |
taaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttcttagcctcaaactgtttgttct |
7036397 |
T |
|
| Q |
218 |
acatctttctgattcttctct |
238 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
7036396 |
acatccttctgattcttctct |
7036376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7075366 - 7075586
Alignment:
| Q |
18 |
ggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttct |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
7075366 |
ggtcctaaccaatcaactgttccaaccaaaacttctagttgttccgcatctttgacatcatcaagaacaataagaaccttcatgcggctaagccttttct |
7075465 |
T |
|
| Q |
118 |
taaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaagaatttttcttaacctcaaactgtttgttcc |
217 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||||||||| ||| |||| |||||| ||||||||||| ||||||||||||||||||||||||| || |
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| T |
7075466 |
taaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctctaatagagtggataaaagcttttttcttaacctcaaactgtttgtgcc |
7075565 |
T |
|
| Q |
218 |
acatctttctgattcttctct |
238 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
7075566 |
atatctttctgattcttctct |
7075586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7023498 - 7023278
Alignment:
| Q |
18 |
ggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttct |
117 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||| | |
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| T |
7023498 |
ggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaaccttcatgcggcgaagccttttat |
7023399 |
T |
|
| Q |
118 |
taaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaagaatttttcttaacctcaaactgtttgttcc |
217 |
Q |
| |
|
||| ||||| |||| |||||||||| ||||||||| ||||||||||| ||| || ||||||||||| |||||||||| |||| ||||||| || |
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| T |
7023398 |
taaataaaggttgtaattcatttatcagatcatctttcgtattttcttcctctaacagagtggataaaagcttttttcttaatgacaaattgtttgtgcc |
7023299 |
T |
|
| Q |
218 |
acatctttctgattcttctct |
238 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
7023298 |
agatctttctgattcttctct |
7023278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7081427 - 7081515
Alignment:
| Q |
24 |
aaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagcct |
112 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| ||| | || ||| |||| |||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
7081427 |
aaccaatcaagtgttccaattaaaatttctaattgttgtggatccttgacatcgtcaagaacaacaagaaccttcatacgacgaagcct |
7081515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 7092809 - 7092892
Alignment:
| Q |
20 |
tcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacg |
103 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||| ||| || ||| |||| |||||||||||||||||||||||||||||| |
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| T |
7092809 |
tcctaaccaatcaagtgttccaattaaagtttctacttgtcgtgaatcattgacatcgtcaagaacaataagaaccttcatacg |
7092892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 7068872 - 7068949
Alignment:
| Q |
24 |
aaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcata |
101 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||| ||| | | |||||||||||||| ||||||||||||| |
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|
| T |
7068872 |
aaccaatcaagtgttccaattaaaatatctagttgctcttgatcactcacatcgtcaagaacaacaagaaccttcata |
7068949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 4218564 - 4218597
Alignment:
| Q |
72 |
atatcgtcaagaacaataagaaccttcatacggt |
105 |
Q |
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||||| |||||||||||||||||||||||||||| |
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|
| T |
4218564 |
atatcatcaagaacaataagaaccttcatacggt |
4218597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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