View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_low_2 (Length: 463)
Name: NF20388_low_2
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 294 - 425
Target Start/End: Original strand, 13245934 - 13246065
Alignment:
| Q |
294 |
gccaactgaatttccaatttaaccaactcattcatcaccaattgtatcctttcatagtcttcattaagattatccatctgagccgagtcattcaacgtca |
393 |
Q |
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| T |
13245934 |
gccaactgaatttccaatttaaccaactcattcatcaccaattgtatcctttcatagtcttcattaagattatccatctgagccgagtcattcaacgtca |
13246033 |
T |
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| Q |
394 |
ctcgtttctcttcttcttcgccatattcaaca |
425 |
Q |
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| T |
13246034 |
ctcgtttctcttcttcttcgccatattcaaca |
13246065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 13245811 - 13245875
Alignment:
| Q |
222 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaattcttgc |
286 |
Q |
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| T |
13245811 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaatgcttgc |
13245875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 13245641 - 13245680
Alignment:
| Q |
182 |
tgacaatatgatgagttcttatttgaggccagcgtaaaac |
221 |
Q |
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| T |
13245641 |
tgacaatatgatgagttcttattcgaggccaacgtaaaac |
13245680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 6829550 - 6829518
Alignment:
| Q |
109 |
caggttaacctcattaagaactactggtgccac |
141 |
Q |
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| T |
6829550 |
caggttaacctcattaagaactactggtgccac |
6829518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 7308580 - 7308638
Alignment:
| Q |
222 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaat |
280 |
Q |
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| T |
7308580 |
gacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaat |
7308638 |
T |
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