View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_low_3 (Length: 433)
Name: NF20388_low_3
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 25019172 - 25018755
Alignment:
| Q |
1 |
tagactctaacactataacattacctcttgtattttattttctgatcgggcaagcaacttgtaatgattctcaaagatgcatgacataaaaacctggaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25019172 |
tagactctaacactataacattacctcttgtattttattttctgatcgggcaagcaacttgtaatgattctcaaagatgcatgacataaaaacctggaac |
25019073 |
T |
|
| Q |
101 |
aaattttagtttggatgcagataaatcaagaacttcagtctgctaacaaatactattaaaatgtttccaaaatcaaacattaaatagcttctcatacgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25019072 |
aaattttagtttggatgcagataaatcaagaacttcagtctgctaacaaatactactaaaatgtttccaaaatcaaacattaaatagcttctcatacgtt |
25018973 |
T |
|
| Q |
201 |
gtttatgaacatggaggtttcgaaaaacttggtctatgcatcattaggcaaaaatatttttgagaactataataatttatacgtggttttccaataatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25018972 |
atttatgaacatggaggtttcgaaaaacttggtctatgcatcattaggcaaaaatatttttgagaactataataatttatacgt-gtttttcaataatgt |
25018874 |
T |
|
| Q |
301 |
tcaaaggaagtaggataaaaataggataatttaacagactggatgccctcaattttttcatttctttataagagattcgacttcggaccattgtccagag |
400 |
Q |
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| T |
25018873 |
tcaaaggaagtaggataaaaataggataatttgacagactggatgccctcaattttttcacttcattataagagattcgacttcggaccattgtccagag |
25018774 |
T |
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| Q |
401 |
tcacccaaggtgggtttct |
419 |
Q |
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| T |
25018773 |
tcacccaaggtgggtttct |
25018755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 40753245 - 40753454
Alignment:
| Q |
17 |
aacattacctcttgtattttattttctgatcgggcaagcaacttgtaatgattctcaaagatgcatgacataaaaacctggaacaaattttagtttggat |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||| |||| |||||||||||||| ||| ||||| || |
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| T |
40753245 |
aacattacctcttgtattttgttttctgatcgggcaagcaacttgtactgattctcaaatatggatgccatataaacctggaacaaaatttggtttgcat |
40753344 |
T |
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| Q |
117 |
gcagataaatcaagaacttcagtctgctaacaaatactattaaaatgtttccaaaatcaaacattaaatagc-ttctcatacgttgtttatgaacatgg- |
214 |
Q |
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||| ||||||||||||||| ||| |||||||||| ||||||| |||||| | || ||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
40753345 |
gcacataaatcaagaacttgagtttgctaacaaa---tattaaactgtttcaagaaccaaacattaaatagctttcccatacgttatttatgaacatgga |
40753441 |
T |
|
| Q |
215 |
aggtttcgaaaaa |
227 |
Q |
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||||||| ||||| |
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| T |
40753442 |
aggtttcaaaaaa |
40753454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 40753906 - 40753968
Alignment:
| Q |
337 |
gactggatgccctcaatttttt-catttcttt-ataagagattcgacttcggaccattgtcca |
397 |
Q |
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|||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||| |
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| T |
40753906 |
gactggatgccctcaattttttgcaattcttttataagagattcgacttcagaccactgtcca |
40753968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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