View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_low_5 (Length: 349)
Name: NF20388_low_5
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 170 - 331
Target Start/End: Original strand, 26959619 - 26959780
Alignment:
| Q |
170 |
gagtaagaaaaatttacaggccaaattctatctgttccagaaccataacggttagagtttgatgatgatgataacaaggagaaagattgtttttggttat |
269 |
Q |
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| T |
26959619 |
gagtaagaaaaatttacaggccaaattctatctgttccagaaccataacggttagagtttgatgatgatgataacaaggagaaagatggtttttggttat |
26959718 |
T |
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| Q |
270 |
tatggatgagaaataacgcagagagaatagcaagacaggaacatgatactagataaactatg |
331 |
Q |
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| T |
26959719 |
tatggatgagaaataacgcagagagaatagcaagacaggaacatgatactagataaactatg |
26959780 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26959449 - 26959546
Alignment:
| Q |
1 |
atgccaccaccaccaacaccaccaacggttccacatgctgatccnnnnnnnccaataactgtggccaaaacaagtttccaactaggttccaattcctg |
98 |
Q |
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| T |
26959449 |
atgccaccaccaccaacaccaccaacggttccacatgctgatccaaaaaaaccaataactgtggccaaaacaagtttccaactaggttccaattcctg |
26959546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41775103 - 41775006
Alignment:
| Q |
1 |
atgccaccaccaccaacaccaccaacggttccacatgctgatccnnnnnnnccaataactgtggccaaaacaagtttccaactaggttccaattcctg |
98 |
Q |
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| T |
41775103 |
atgccaccaccaccaacaccaccaacggttccaaaagcagatcctagaaaaccaataattgaggccaaagcaagtctccaactaggcttcaattcctg |
41775006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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