View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20388_low_6 (Length: 301)

Name: NF20388_low_6
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20388_low_6
NF20388_low_6
[»] chr1 (7 HSPs)
chr1 (1-282)||(11818089-11818370)
chr1 (44-151)||(3527724-3527831)
chr1 (44-161)||(32815199-32815316)
chr1 (69-153)||(38788671-38788755)
chr1 (44-155)||(894750-894861)
chr1 (113-152)||(12047253-12047292)
chr1 (88-160)||(4044864-4044936)
[»] chr6 (2 HSPs)
chr6 (41-154)||(40015-40128)
chr6 (38-161)||(7984534-7984657)
[»] chr2 (11 HSPs)
chr2 (46-161)||(13490814-13490929)
chr2 (44-151)||(12956873-12956979)
chr2 (89-161)||(40821210-40821282)
chr2 (46-156)||(36903935-36904045)
chr2 (105-161)||(7670187-7670243)
chr2 (89-161)||(9047629-9047701)
chr2 (46-122)||(39491066-39491142)
chr2 (44-151)||(2854399-2854506)
chr2 (44-157)||(38402508-38402621)
chr2 (108-156)||(7920228-7920276)
chr2 (89-161)||(14812304-14812376)
[»] chr3 (11 HSPs)
chr3 (44-156)||(27213970-27214082)
chr3 (64-152)||(52525478-52525566)
chr3 (46-161)||(44455062-44455177)
chr3 (64-161)||(2528048-2528140)
chr3 (45-161)||(23629286-23629400)
chr3 (44-156)||(45249394-45249506)
chr3 (113-161)||(50888883-50888931)
chr3 (89-161)||(53199786-53199858)
chr3 (108-161)||(25122360-25122413)
chr3 (105-161)||(15568513-15568569)
chr3 (105-161)||(15664492-15664548)
[»] chr4 (13 HSPs)
chr4 (63-161)||(34236717-34236815)
chr4 (45-161)||(29927278-29927394)
chr4 (71-161)||(10097949-10098039)
chr4 (44-156)||(2168424-2168536)
chr4 (103-161)||(33335278-33335336)
chr4 (105-161)||(22575376-22575432)
chr4 (89-141)||(4512819-4512871)
chr4 (44-156)||(9093615-9093727)
chr4 (44-140)||(21935291-21935386)
chr4 (44-156)||(37624798-37624910)
chr4 (118-161)||(32922841-32922884)
chr4 (38-156)||(4452812-4452930)
chr4 (89-142)||(43771856-43771909)
[»] chr8 (11 HSPs)
chr8 (71-161)||(42446555-42446645)
chr8 (44-161)||(13177784-13177901)
chr8 (45-98)||(38573263-38573316)
chr8 (90-158)||(34505188-34505256)
chr8 (75-161)||(2072197-2072283)
chr8 (64-154)||(32967694-32967784)
chr8 (46-161)||(515149-515262)
chr8 (48-161)||(7621449-7621560)
chr8 (44-141)||(24999438-24999535)
chr8 (100-152)||(32094367-32094419)
chr8 (105-161)||(41909214-41909270)
[»] chr5 (6 HSPs)
chr5 (44-147)||(36487184-36487287)
chr5 (48-161)||(16054401-16054513)
chr5 (44-156)||(37447268-37447380)
chr5 (44-98)||(34338876-34338930)
chr5 (64-151)||(39351064-39351151)
chr5 (71-161)||(3135629-3135719)
[»] chr7 (8 HSPs)
chr7 (48-161)||(29414609-29414722)
chr7 (63-133)||(46515466-46515536)
chr7 (44-156)||(10624917-10625029)
chr7 (48-137)||(29555769-29555858)
chr7 (68-156)||(1111733-1111821)
chr7 (31-151)||(25119981-25120101)
chr7 (89-156)||(37869753-37869820)
chr7 (39-98)||(40199051-40199110)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 11818089 - 11818370
Alignment:
Q  1 ttgcaaattttagtaaaataatggattttataaatagaaaaatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  11818089 ttgcaaattttagtaaaataatggattttataaatagaaaaatggtcttactaacaagtactctaaaggcattgtttaaagaacccataaaaagaaatct 11818188  T
Q  101 tgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaagcttaaacaatgccctaggggctatttatgtcaataata 200  Q
    ||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11818189 tgtcttgaaaatacaagtcaaaaacatgtaaaagtcataactatacaattttcaatataatgcttaaacaatgccctaggggctatttatgtcaataata 11818288  T
Q  201 tcgttattatatgaaggtaaaaatgaaaatataggaaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggtta 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11818289 tcgttattatatgaaggtaaaactgaaaatataggaaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggtta 11818370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 3527831 - 3527724
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||  |||||||||| ||||| |  ||| |||||||||| | || |||||||||||||||    
T  3527831 ggtcttgctaacaagtactctaagagcattgtttaaggaatccacaaaaagaaattttgttatggaaatacaagtcaaacatatataaaagtcataacta 3527732  T
Q  144 tacaattt 151  Q
     |||||||    
T  3527731 cacaattt 3527724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 32815316 - 32815199
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    |||||| |||| |||| || ||| ||||||||||||||||| |  ||||||| || || | ||||||| |||||||||| | |||||||||| |||| ||    
T  32815316 ggtcttactaataagtgctttaaaaacattgtttaaagaactcacaaaaagatattttatcttaaaaatacaagtcaaacatatgtaaaagtaataatta 32815217  T
Q  144 tacaattttcaatataaa 161  Q
     | |||||| ||| ||||    
T  32815216 cataatttttaatgtaaa 32815199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 38788671 - 38788755
Alignment:
Q  69 acattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttc 153  Q
    |||||||||||||| ||| ||||| ||||| |||| ||  |||  ||||||||| || ||| ||||||||||||| |||||||||    
T  38788671 acattgtttaaagagcccataaaaggaaattttgtcttgtaaattcaagtcaaacacttgtgaaagtcataactaaacaattttc 38788755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 894750 - 894861
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    |||||||||||||||| | |||||  |||||||||| ||||||  |||| |||||  ||| || |||  |||||||||| || ||| ||||||||||       
T  894750 ggtcttgctaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaattatgtcttgaaagtacaagtcaaacacttgttaaagtcataatcg 894849  T
Q  144 tacaattttcaa 155  Q
    ||||||||||||    
T  894850 tacaattttcaa 894861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 12047292 - 12047253
Alignment:
Q  113 acaagtcaaagacatgtaaaagtcataactatacaatttt 152  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  12047292 acaagtcaaacacatgtaaaagtcataactacacaatttt 12047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 4044864 - 4044936
Alignment:
Q  88 taaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataa 160  Q
    ||||||||||  |||| || |||| |||||||||| | || || |||||||||||||||||||| ||| ||||    
T  4044864 taaaaagaaagtttgtcttgaaaatacaagtcaaacatatatacaagtcataactatacaatttccaagataa 4044936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 40015 - 40128
Alignment:
Q  41 aatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataa 140  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||  | |||||||| |||| || |||| |||| ||||| |||||||||||||||||    
T  40015 aatggtcttgctaacaagtgccctaaggacattgtttaaggaacccacataaagaaattttgtcttgaaaatacaaatcaaacacatgtaaaagtcataa 40114  T
Q  141 ctatacaattttca 154  Q
    |||| |||||||||    
T  40115 ctatgcaattttca 40128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 7984534 - 7984657
Alignment:
Q  38 aaaaatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtca 137  Q
    ||||| ||| ||||||||||||  ||| || ||||||||||| ||||||  |||||||||  |||| || |||| |||||||||| ||||||||||||||    
T  7984534 aaaaaaggttttgctaacaagtgttctgaggacattgtttaatgaacccacaaaaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtca 7984633  T
Q  138 taactatacaattttcaatataaa 161  Q
    |||||| | |||||||||| ||||    
T  7984634 taactacaaaattttcaatgtaaa 7984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 13490814 - 13490929
Alignment:
Q  46 tcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactata 145  Q
    |||||||||||||| | |||| | |||||||||||||||||  ||||| |||| |||| || |||| | ||| |||| |||||||||| |||||||||||    
T  13490814 tcttgctaacaagtgccctaaaagcattgtttaaagaacccacaaaaataaattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactata 13490913  T
Q  146 caattttcaatataaa 161  Q
    ||||||||||||||||    
T  13490914 caattttcaatataaa 13490929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 12956979 - 12956873
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||||||||||| |||||||| | ||||||||| || ||  |||| | |||| || | ||||||| |||||||||| |||||| |||||||||||||    
T  12956979 ggtcttgctaacaagcactctaaggatattgtttaaggatccactaaaga-aaattttatcttaaaaatacaagtcaaacacatgtcaaagtcataacta 12956881  T
Q  144 tacaattt 151  Q
    ||||||||    
T  12956880 tacaattt 12956873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 40821210 - 40821282
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||| |||| |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| ||||    
T  40821210 aaaaataaattttgttttaaaaatataagtcaaatatatttaaaagtcataactgtacaattttcaatgtaaa 40821282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 36903935 - 36904045
Alignment:
Q  46 tcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactata 145  Q
    |||||||||||||| | |||||  |||||||||| ||||||  ||||||||||  ||| || |||| |||||||||| || | | |||||||||||  ||    
T  36903935 tcttgctaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattaaagtcataaccgta 36904034  T
Q  146 caattttcaat 156  Q
    |||||| ||||    
T  36904035 caatttccaat 36904045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 7670187 - 7670243
Alignment:
Q  105 ttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||| |||||||||| | ||| ||||||||||| ||||||||||||||| ||||    
T  7670187 ttaaaaatacaagtcaaacatatggaaaagtcataattatacaattttcaatgtaaa 7670243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 9047701 - 9047629
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||||||  |||||| |||| |||||||||| || ||| |||||||||||  ||||||||||||| ||||    
T  9047701 aaaaagaaattatgttttgaaaatacaagtcaaacacttgttaaagtcataaccgtacaattttcaatgtaaa 9047629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 39491142 - 39491066
Alignment:
Q  46 tcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaa 122  Q
    ||||||||||||||  ||||| || ||||||||||||| || ||||||||||| |||| || |||| |||| |||||    
T  39491142 tcttgctaacaagtgttctaaaaatattgtttaaagaatccataaaaagaaatgttgtcttcaaaatacaaatcaaa 39491066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 2854506 - 2854399
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    |||||||||||||||| | |||||  ||| |||||| ||| ||  | |||||||| |||| || |||| |||||| ||| | || |||||||||||||||    
T  2854506 ggtcttgctaacaagtgccctaagggcatcgtttaaggaatccacataaagaaattttgtcttgaaaatacaagttaaacatatctaaaagtcataacta 2854407  T
Q  144 tacaattt 151  Q
     |||||||    
T  2854406 cacaattt 2854399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 38402508 - 38402621
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||||||||||||    ||||  |||||||||| ||| || |||||||||||  |||||| |||| |||||| ||| || | | |||||||||||      
T  38402508 ggtcttgctaacaagtgtcataagggcattgtttaaggaatccataaaaagaaattatgttttgaaaatacaagttaaacacttcttaaagtcataaccg 38402607  T
Q  144 tacaattttcaata 157  Q
    |||||||| |||||    
T  38402608 tacaatttccaata 38402621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 7920228 - 7920276
Alignment:
Q  108 aaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaat 156  Q
    |||| |||| ||||| |||||||||| ||||||||| ||||||||||||    
T  7920228 aaaatacaaatcaaacacatgtaaaaatcataactacacaattttcaat 7920276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 14812376 - 14812304
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||||| || | || |||| |||||||||| | |||||||||| |||| || |||||||||||| ||||    
T  14812376 aaaaagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaa 14812304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 27214082 - 27213970
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| ||||||||  |||||| ||||||||||| |||| |  |||||||||  |||| ||||||| |||||||||| | ||||||||||||||||||    
T  27214082 ggtcttgttaacaagtgttctaaggacattgtttaaggaacacacaaaaagaaactttgtcttaaaaatacaagtcaaacatatgtaaaagtcataacta 27213983  T
Q  144 tacaattttcaat 156  Q
    |||||||| ||||    
T  27213982 tacaatttccaat 27213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 52525566 - 52525478
Alignment:
Q  64 taagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaatttt 152  Q
    |||| ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||||||||||||||| |||| ||||||    
T  52525566 taagtacattatttaaggaacccataaaaagaaattttgttttaaaaatataagtcaaatacatgtaaaagtcataattatataatttt 52525478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 44455062 - 44455177
Alignment:
Q  46 tcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactata 145  Q
    ||||||||||||||  |||||| || ||||||||  ||| |  | |||||||| |||| || |||| |||||||||| |||  |||||||||||||||||    
T  44455062 tcttgctaacaagtgttctaaggacgttgtttaagaaactcacagaaagaaattttgtcttgaaaatacaagtcaaacacacataaaagtcataactata 44455161  T
Q  146 caattttcaatataaa 161  Q
    ||||||||||| ||||    
T  44455162 caattttcaatgtaaa 44455177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 2528048 - 2528140
Alignment:
Q  64 taagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||| ||||||||||||||| |   |||||||||  ||| |||||||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  2528048 taagatcattgtttaaagaacacacgaaaagaaat--tgtcttaaaaacacaagtcaaacac---taaaagtcataactatacaaatttcaatataaa 2528140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 23629400 - 23629286
Alignment:
Q  45 gtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactat 144  Q
    ||||||||||||| | || ||||  |||||||||| ||| |||| |||| |||  ||||||| |||| |||| ||||| ||||||||||||||||| |||    
T  23629400 gtcttgctaacaaattctttaagcgcattgtttaa-gaaaccttcaaaataaaa-ttgttttgaaaatacaaatcaaacacatgtaaaagtcataattat 23629303  T
Q  145 acaattttcaatataaa 161  Q
    |||||||||||| ||||    
T  23629302 acaattttcaatgtaaa 23629286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 45249506 - 45249394
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| |||||||| | |||||  |||||||||| ||||||  ||||||||||  ||| || |||| |||||||||| |  ||| |||||||||||      
T  45249506 ggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacatttgttaaagtcataaccg 45249407  T
Q  144 tacaattttcaat 156  Q
    |||||||| ||||    
T  45249406 tacaatttccaat 45249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 50888883 - 50888931
Alignment:
Q  113 acaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||||| |||||||||||| ||||||| |||||||| ||||||||    
T  50888883 acaagtcaaacacatgtaaaagttataactacacaatttttaatataaa 50888931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 53199858 - 53199786
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||| ||| ||||| ||||||| | || ||||| |||||| ||||||||||||| |||||||||||| ||||    
T  53199858 aaaaaaaaaacttgtcttaaaaataaaaatcaaacacatgttaaagtcataactaaacaattttcaatgtaaa 53199786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 25122413 - 25122360
Alignment:
Q  108 aaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||| |||||||||| | | || ||||||||||||| |||||||||||||||||    
T  25122413 aaaatacaagtcaaacatacgtgaaagtcataactacacaattttcaatataaa 25122360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 15568513 - 15568569
Alignment:
Q  105 ttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||  ||||||||| |||| |||||  ||||||||||||||||| ||||||||    
T  15568513 ttaaaaatgcaagtcaaacacatataaaaagcataactatacaatttttaatataaa 15568569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 15664492 - 15664548
Alignment:
Q  105 ttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||| |||||| ||| |||||||||| ||||||||||| || ||| ||||||||    
T  15664492 ttaaaaatacaagttaaacacatgtaaaaatcataactatataacttttaatataaa 15664548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 34236717 - 34236815
Alignment:
Q  63 ctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||| ||||||||||||||||||  |||||||||| |||| ||||||| |||| ||||| |||||||||| ||||||||| ||||||| |||| ||||    
T  34236717 ctaaggacattgtttaaagaacccacaaaaagaaattttgtcttaaaaatacaattcaaaaacatgtaaaaatcataactacacaatttgcaatgtaaa 34236815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 29927278 - 29927394
Alignment:
Q  45 gtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactat 144  Q
    ||||||||||||||| | |||||  |||||||||| ||| ||  |||||||||  |||| ||  ||| |||||||||| |||| ||||||||||||||||    
T  29927278 gtcttgctaacaagtgccctaagggcattgtttaaggaatccacaaaaagaaactttgtcttggaaatacaagtcaaacacatataaaagtcataactat 29927377  T
Q  145 acaattttcaatataaa 161  Q
    |||||||||||| ||||    
T  29927378 acaattttcaatgtaaa 29927394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 10098039 - 10097949
Alignment:
Q  71 attgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||||| ||| ||  ||| |||||| |||| || |||| | ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10098039 attgtttaaggaatccacaaagagaaattttgtcttgaaaatataaggcaaatacatgtaaaagtcataactatacaattttcaatataaa 10097949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 2168424 - 2168536
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| |||||||| | ||||| |||||||||||||||||| |||||| ||||  |||  | |||| |||||||||| || ||| |||||| ||||      
T  2168424 ggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaataaattatgtcctgaaaatacaagtcaaacacttgttaaagtcgtaaccg 2168523  T
Q  144 tacaattttcaat 156  Q
    |||||||||||||    
T  2168524 tacaattttcaat 2168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 33335278 - 33335336
Alignment:
Q  103 ttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||||| |||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  33335278 ttttaaaaatacaagtcaaatacatgtaaatatcataactacacaattttcaatataaa 33335336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 22575376 - 22575432
Alignment:
Q  105 ttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||| |||||||||| ||||||||||||||||| || | |||||||||||||||    
T  22575376 ttaaaaatacaagtcaaacacatgtaaaagtcataattacataattttcaatataaa 22575432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 4512819 - 4512871
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataac 141  Q
    |||||||||| |||| ||||||||| |||||||| |||||||||||| |||||    
T  4512819 aaaaagaaattttgtcttaaaaacataagtcaaacacatgtaaaagttataac 4512871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 9093727 - 9093615
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| ||||||||   ||||| ||||||||||| |||||| ||||||||||| |||  || |||| | |||||||| || |||  |||| |||||      
T  9093727 ggtcttgttaacaagtgtcctaaggacattgtttaaggaacccataaaaagaaattttgccttgaaaatataagtcaaacacttgtttaagttataaccg 9093628  T
Q  144 tacaattttcaat 156  Q
    |||||||||||||    
T  9093627 tacaattttcaat 9093615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 21935291 - 21935386
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataa 140  Q
    ||||||| || ||||| ||||||||||||| ||||| |||| |  ||||||||||||||| | ||||| |||||| ||| | |||||||| ||||||    
T  21935291 ggtcttgttagcaagtgctctaagaacattatttaaggaactcaaaaaaagaaatcttgtctcaaaaatacaagttaaaca-atgtaaaaatcataa 21935386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 37624798 - 37624910
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| |||||||| |  |||  ||||||||||| |||||| |||||||||||  || ||| |||| | |||||||| || ||| ||||| |||||      
T  37624798 ggtcttgttaacaagttccataaagacattgtttaaggaacccataaaaagaaataatgctttgaaaatataagtcaaacacttgttaaagttataaccg 37624897  T
Q  144 tacaattttcaat 156  Q
    |||||||||||||    
T  37624898 tacaattttcaat 37624910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 32922841 - 32922884
Alignment:
Q  118 tcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||    
T  32922841 tcaaatacatgtaaaagtgataactatataattttcaatataaa 32922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 4452812 - 4452930
Alignment:
Q  38 aaaaatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtca 137  Q
    |||||| |||||||||||||||  ||||| |  ||||| ||| ||| |  ||||| ||||| ||||||| || | |||||||||| | || |||||||||    
T  4452812 aaaaattgtcttgctaacaagtgttctaaaagtattgtctaaggaatctataaaatgaaattttgttttgaatatacaagtcaaatatatctaaaagtca 4452911  T
Q  138 taactatacaattttcaat 156  Q
    ||||||   ||||||||||    
T  4452912 taactacgtaattttcaat 4452930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 43771856 - 43771909
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataact 142  Q
    |||||||||  |||| ||||||| |||||||||| |||||| ||||||||||||    
T  43771856 aaaaagaaactttgtcttaaaaatacaagtcaaacacatgttaaagtcataact 43771909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 42446555 - 42446645
Alignment:
Q  71 attgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||||||||||   |||||||||| |||||||||||| | |||| ||| | |||||||||| ||||||| |||||||||||||||||    
T  42446555 attgtttaaagaacctacaaaaagaaattttgttttaaaaatataagttaaatatatgtaaaagttataactacacaattttcaatataaa 42446645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 13177901 - 13177784
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||||||||||||   |||||  |||||||||| ||| | | |||||||||  |||| || |||| |||||||||| ||||||||||||||||||||    
T  13177901 ggtcttgctaacaagtgtcctaagggcattgtttaaggaatcttcaaaaagaaagtttgtcttgaaaatacaagtcaaacacatgtaaaagtcataacta 13177802  T
Q  144 tacaattttcaatataaa 161  Q
     | ||||| |||||||||    
T  13177801 cataatttccaatataaa 13177784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 38573263 - 38573316
Alignment:
Q  45 gtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaat 98  Q
    |||||| |||||||| ||||||||||||||||||| |||||| |||||||||||    
T  38573263 gtcttgttaacaagtgctctaagaacattgtttaaggaacccataaaaagaaat 38573316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 34505188 - 34505256
Alignment:
Q  90 aaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatat 158  Q
    ||||||| | || |||| |||| | |||||||| ||||||||||||||||| |||||||||||||||||    
T  34505188 aaaagaattttttttttgaaaaaataagtcaaacacatgtaaaagtcataattatacaattttcaatat 34505256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 2072283 - 2072197
Alignment:
Q  75 tttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||||  ||||||||||||| || | || |||| |||| ||||| |||| ||||||| ||||||| |||||||| ||||||||    
T  2072283 tttaaagaatgcttaaaaagaaattttctcttgaaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaa 2072197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 32967694 - 32967784
Alignment:
Q  64 taagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttca 154  Q
    |||| ||||||||||| |||  | |||| |||||| || | || |||| ||||||||||  ||||||||| ||||||||||||||||||||    
T  32967694 taaggacattgtttaaggaattcataaagagaaattttatcttcaaaatacaagtcaaactcatgtaaaaatcataactatacaattttca 32967784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 515262 - 515149
Alignment:
Q  46 tcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactata 145  Q
    |||||||||||||||   ||||   ||||||||| |||||| ||||| ||||   ||| || |||| |||||||||| | |||||||||||||||||| |    
T  515262 tcttgctaacaagtatcgtaagggtattgtttaaggaacccataaaaggaaac--tgtcttgaaaatacaagtcaaatatatgtaaaagtcataactaca 515165  T
Q  146 caattttcaatataaa 161  Q
    |||||| |||| ||||    
T  515164 caatttccaatttaaa 515149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 7621449 - 7621560
Alignment:
Q  48 ttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactataca 147  Q
    |||||||||| | || |||| | ||||||||| |||  ||| ||||||||| |||| |||| || | |||||||| ||||||||||||||||| |||| |    
T  7621449 ttgctaacaaattctttaaggatattgtttaa-gaaaacttcaaaagaaat-ttgtcttaagaatataagtcaaacacatgtaaaagtcataattataaa 7621546  T
Q  148 attttcaatataaa 161  Q
    || |||||| ||||    
T  7621547 atgttcaatgtaaa 7621560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 24999535 - 24999438
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataac 141  Q
    ||||||| |||||||| | |||||  ||||||| || ||||||  ||||||||||  ||| || |||| |||||||||| || ||| |||||||||||    
T  24999535 ggtcttgttaacaagtgccctaagggcattgttaaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagtcataac 24999438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 32094367 - 32094419
Alignment:
Q  100 ttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaatttt 152  Q
    ||||| |||||| | |||||||| ||||||||||||||||| |||| ||||||    
T  32094367 ttgttataaaaatataagtcaaatacatgtaaaagtcataattatataatttt 32094419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 41909214 - 41909270
Alignment:
Q  105 ttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    ||||||| |||||| ||| | || |||||||||||||||||||||||| ||| ||||    
T  41909214 ttaaaaatacaagttaaacatatctaaaagtcataactatacaatttttaatgtaaa 41909270  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 36487184 - 36487287
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    |||||||||||||||| || |||||||||||||||| ||||||  ||||||||||  ||| || |||| |||| ||||| | |||| ||||||||||||     
T  36487184 ggtcttgctaacaagtgctataagaacattgtttaaggaacccacaaaaagaaattatgtattgaaaatacaaatcaaacatatgttaaagtcataactg 36487283  T
Q  144 taca 147  Q
    ||||    
T  36487284 taca 36487287  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 16054513 - 16054401
Alignment:
Q  48 ttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactataca 147  Q
    ||||||||||||   ||||| |||||||||||  |||||  |||||||||| ||||||| |||| |||||||||| |||| |||||||||||| || | |    
T  16054513 ttgctaacaagtgtcctaaggacattgtttaagaaacccacaaaaagaaattttgtttttaaaatacaagtcaaacacatataaaagtcataa-tacata 16054415  T
Q  148 attttcaatataaa 161  Q
    ||||||||| ||||    
T  16054414 attttcaatgtaaa 16054401  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 37447380 - 37447268
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    |||||||||||||||| | ||||||||||||||||| |||||   |||||||||  |||| || |||| | |||||||| |||| ||||| ||||||||     
T  37447380 ggtcttgctaacaagtgccctaagaacattgtttaaggaacctacaaaaagaaactttgtcttgaaaatataagtcaaacacatataaaattcataactg 37447281  T
Q  144 tacaattttcaat 156  Q
     | ||||||||||    
T  37447280 cataattttcaat 37447268  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 34338876 - 34338930
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaat 98  Q
    ||||||| |||||||| | ||||| |||||||||||||||||| |||||||||||    
T  34338876 ggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaagaaat 34338930  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 39351151 - 39351064
Alignment:
Q  64 taagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattt 151  Q
    ||||| ||||||||||||||| |  ||||| |||| || |  | |||| |||||||||| |||| |||||||||||| ||||||||||    
T  39351151 taagagcattgtttaaagaactcagaaaaataaattttatcatgaaaatacaagtcaaacacatctaaaagtcataattatacaattt 39351064  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 3135719 - 3135629
Alignment:
Q  71 attgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaatataaa 161  Q
    |||||||||  ||||  ||||||||||  ||||  |||||| |||||||||| | || ||||||||||||||| |||||||| ||| ||||    
T  3135719 attgtttaagaaaccaataaaaagaaagtttgtcataaaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgtaaa 3135629  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 29414609 - 29414722
Alignment:
Q  48 ttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactataca 147  Q
    |||||||||| | | |||| |||||||||||| ||| ||  |||| | ||  |||| || |||| |||||||||| |||||||||||||||| |||||||    
T  29414609 ttgctaacaaatgccctaaaaacattgtttaaggaagccacaaaatggaactttgtcttgaaaatacaagtcaaatacatgtaaaagtcatacctataca 29414708  T
Q  148 attttcaatataaa 161  Q
    ||||||||| ||||    
T  29414709 attttcaatgtaaa 29414722  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 46515466 - 46515536
Alignment:
Q  63 ctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaa 133  Q
    ||||| |||||||||||||||| | ||||||||||| || ||||||||| |||||||||| |||| |||||    
T  46515466 ctaaggacattgtttaaagaactcataaaaagaaatattattttaaaaatacaagtcaaacacatataaaa 46515536  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 10624917 - 10625029
Alignment:
Q  44 ggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataacta 143  Q
    ||||||| ||||||||  ||||||  |||||||||||||||||  ||||||||||  ||| || |||| |||||||||| || | | | |||||||||      
T  10624917 ggtcttgttaacaagtgttctaagggcattgtttaaagaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattatagtcataaccg 10625016  T
Q  144 tacaattttcaat 156  Q
    |||||||||||||    
T  10625017 tacaattttcaat 10625029  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 29555858 - 29555769
Alignment:
Q  48 ttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtca 137  Q
    ||||||||||||   |||||| |||||||||| |||| |  |||||||||| |  | ||||||||| |||||||| ||||||||||||||    
T  29555858 ttgctaacaagtgtcctaagagcattgtttaaggaactcgcaaaaagaaatttcatcttaaaaacagaagtcaaacacatgtaaaagtca 29555769  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 1111821 - 1111733
Alignment:
Q  68 aacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaat 156  Q
    ||||||| |||||||||||  |||||  |||  |||||| |||| | |||||||| || ||| ||||||||||| ||||||||||||||    
T  1111821 aacattgcttaaagaacccacaaaaaataattatgttttgaaaatataagtcaaacacttgttaaagtcataaccatacaattttcaat 1111733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 25120101 - 25119981
Alignment:
Q  31 taaatagaaaaatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaatcttgttttaaaaacacaagtcaaagacatgta 130  Q
    |||||| || ||||||||||||||||||| | |||||   ||||||||| ||| ||  ||||||||||  ||| || |||| |||| ||||| | ||||     
T  25120101 taaataaaacaatggtcttgctaacaagtgccctaagggtattgtttaaggaatccacaaaaagaaattgtgtcttgaaaatacaattcaaatatatgtt 25120002  T
Q  131 aaagtcataactatacaattt 151  Q
    ||||| ||||| |||||||||    
T  25120001 aaagttataaccatacaattt 25119981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 37869820 - 37869753
Alignment:
Q  89 aaaaagaaatcttgttttaaaaacacaagtcaaagacatgtaaaagtcataactatacaattttcaat 156  Q
    ||||||||||  ||||||||||| | |||||||| || ||| |||||||||||  |||||||||||||    
T  37869820 aaaaagaaattatgttttaaaaatataagtcaaacacttgttaaagtcataaccgtacaattttcaat 37869753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 40199110 - 40199051
Alignment:
Q  39 aaaatggtcttgctaacaagtactctaagaacattgtttaaagaacccttaaaaagaaat 98  Q
    |||||||||||| |||||| | ||||||| || |||||||||||| || |||||||||||    
T  40199110 aaaatggtcttgttaacaaatgctctaaggacgttgtttaaagaatccataaaaagaaat 40199051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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