View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20388_low_8 (Length: 254)
Name: NF20388_low_8
Description: NF20388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20388_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 41027295 - 41027519
Alignment:
| Q |
24 |
atgatagtttattctcgcagaatacctgcaaacataccaaggattgtataattgttgctagaagtacaaagtgttcaaccttttatgtggcagagtnnnn |
123 |
Q |
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| T |
41027295 |
atgacagtttattctcgcagaatacctgcaaacataccaaggattgtataattgttgctagaagtacaaagtgttcaaccttttatgtggcagagtaaaa |
41027394 |
T |
|
| Q |
124 |
nnntaattaaatatgttcatgtaattgaatctactgaaaaaataaagttatgacataatagattgtgtcacatgggtgagaatgtcatatttgaattacg |
223 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41027395 |
aaataattaaatatgttcatgtaattgaattaactgaaaaaataaagttatgacataatagattgtgtcacatgagtgagaatgtcatatttgaattaca |
41027494 |
T |
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| Q |
224 |
aaagtggaacatatttttggacatg |
248 |
Q |
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|||||||||||| || || |||||| |
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| T |
41027495 |
aaagtggaacatgttgtttgacatg |
41027519 |
T |
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