View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20389_high_5 (Length: 302)

Name: NF20389_high_5
Description: NF20389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20389_high_5
NF20389_high_5
[»] chr6 (4 HSPs)
chr6 (1-286)||(32681759-32682053)
chr6 (33-140)||(1607542-1607650)
chr6 (33-104)||(4856511-4856582)
chr6 (33-104)||(11550703-11550774)
[»] chr8 (9 HSPs)
chr8 (138-286)||(18667363-18667520)
chr8 (139-286)||(25064487-25064643)
chr8 (139-286)||(8351705-8351861)
chr8 (138-271)||(45250441-45250583)
chr8 (138-286)||(8362853-8363010)
chr8 (33-140)||(23136909-23137017)
chr8 (139-286)||(35137221-35137377)
chr8 (33-140)||(45531212-45531320)
chr8 (33-135)||(45250610-45250712)
[»] chr1 (2 HSPs)
chr1 (138-286)||(45916430-45916587)
chr1 (137-271)||(48810920-48811063)
[»] chr3 (7 HSPs)
chr3 (139-286)||(20783472-20783628)
chr3 (139-286)||(38353987-38354143)
chr3 (138-271)||(50246036-50246178)
chr3 (33-140)||(37198236-37198344)
chr3 (33-135)||(50246205-50246307)
chr3 (33-140)||(20919704-20919812)
chr3 (33-140)||(20928666-20928774)
[»] scaffold0216 (3 HSPs)
scaffold0216 (138-263)||(25773-25907)
scaffold0216 (138-263)||(18590-18724)
scaffold0216 (33-135)||(25644-25746)
[»] scaffold0155 (2 HSPs)
scaffold0155 (138-270)||(27193-27332)
scaffold0155 (33-135)||(27064-27166)
[»] chr7 (3 HSPs)
chr7 (138-286)||(7945912-7946069)
chr7 (218-286)||(29494613-29494681)
chr7 (33-134)||(7946092-7946193)
[»] chr4 (1 HSPs)
chr4 (139-286)||(14252638-14252790)
[»] chr2 (8 HSPs)
chr2 (33-141)||(16311195-16311304)
chr2 (139-286)||(20104041-20104197)
chr2 (33-140)||(41747810-41747918)
chr2 (143-286)||(16139820-16139972)
chr2 (33-135)||(24971748-24971850)
chr2 (138-211)||(24971648-24971721)
chr2 (148-286)||(21124732-21124879)
chr2 (218-286)||(16311036-16311104)
[»] chr5 (2 HSPs)
chr5 (138-221)||(27589157-27589240)
chr5 (33-117)||(9662629-9662714)
[»] scaffold0059 (2 HSPs)
scaffold0059 (33-117)||(66782-66867)
scaffold0059 (33-117)||(74887-74972)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 32681759 - 32682053
Alignment:
Q  1 tagtcaagacaatgtctaatgttttgtatttgatttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||||||||||||    
T  32681759 tagttaagacaatgtctaatgttttgtatttgatttgatatagaatcgagatgctagagtttagatatattatgttgattgcatattacttgatgaattg 32681858  T
Q  101 atatgtcaaaaactaatttaagtaaattgatttagctttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32681859 atatgtcaaaaactaatttaagtaaattgatttagctttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtt 32681958  T
Q  201 tttaaacacatattccg---------acatcatcctaaaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  32681959 tttaaacacatattccgacatgttgcacatcatcctaaaggttgcatacaattgattcagatcatctaatttaggcaaaagttttctaataagaa 32682053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 1607650 - 1607542
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    |||||||||| |||| || |||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  1607650 atttgatataaaatcaagatgttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 1607551  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  1607550 ttagctttt 1607542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 4856582 - 4856511
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatat 104  Q
    ||||||||||||||| || |||||||||||| |||  |||| ||||||| || |||||| ||||||||||||    
T  4856582 atttgatatagaatcaagatgttagagtttatatatcttatgttgattgaatattacttaatgaattgatat 4856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 11550703 - 11550774
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatat 104  Q
    ||||||||||||||| || |||||||||||| |||  |||| ||||||| || |||||| ||||||||||||    
T  11550703 atttgatatagaatcaagatgttagagtttatatatcttatgttgattgaatattacttaatgaattgatat 11550774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 18667363 - 18667520
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||| || | |||         |||||||||||    
T  18667363 ttttgtcttgcacaaatgatatattacacatgaactcttatttgatgaatcctaattgatgcttttaaacaaatctcccgatatgttaaacatcatccta 18667462  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||| ||||| |||||||||||||| |||| ||||||| |||||||    
T  18667463 aaggttgcatacaattgattcacatcatctaatttggacaaaccttttcttataagaa 18667520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 25064487 - 25064643
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaa 229  Q
    ||||||||||||||  | |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||| |         |||||| | |||    
T  25064487 tttgtcttgcacaatgggtatattacacatgaaatcttatttgatgaatcttaattgatgcttttaaacacatcttcggacatgttaaacatcaccgtaa 25064586  T
Q  230 aggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    ||||||||||||||| ||||| ||||||||| |||| |||| |||||||||||||||    
T  25064587 aggttgcatacaattgattcacatcatctaagttggacaaaccttttctaataagaa 25064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 8351705 - 8351861
Alignment:
Q  139 tttgtcttgcacaaatgt-tatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||| |         |||||| | ||    
T  8351705 tttgtcttgcacaa-tgtgtatattacacatgaaatcttatttgatgaatcttaattgatgcttttaaacacatcttcggacatgttaaacatcaccgta 8351803  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    ||||||||||||||||  |||| ||||||||| |||| |||| |||||||||||||||    
T  8351804 aaggttgcatacaattggttcacatcatctaagttggacaaaccttttctaataagaa 8351861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 45250583 - 45250441
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||||||| ||||| |||||| | |||||||||||| |||| ||||||||| |||||||||||| ||| |         ||||||| |||    
T  45250583 ttttgtcttgcacaaatgatatatcacacatgagctcttatttgataaatcctaattgatgcttttaaacacatcttcggacatgttaaacatcattcta 45250484  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaa 271  Q
    ||||||||||||||||  |||| |||||||||||||| |||||    
T  45250483 aaggttgcatacaattgcttcacatcatctaatttggacaaaa 45250441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 8362853 - 8363010
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccgacat---------catccta 228  Q
    |||||||||||||||||| ||||||||||||   |||||||||||| |||  ||||||||  |||||||||||| | | |||||         |||||||    
T  8362853 ttttgtcttgcacaaatgatatattacacatgcgctcttatttgataaattctaattgatacttttaaacacatctccggacatgttaaatatcatccta 8362952  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    ||||||||||||||||  |||| |||||||||||||| |||| ||||||| |||||||    
T  8362953 aaggttgcatacaattggttcacatcatctaatttggacaaaccttttcttataagaa 8363010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 23136909 - 23137017
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || |||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  23136909 atttgatatagaatcaagatgttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 23137008  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  23137009 ttagctttt 23137017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 35137221 - 35137377
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaa 229  Q
    ||||||||||||||  | |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||| |         |||||| | |||    
T  35137221 tttgtcttgcacaatgggtatattacacatgaaatcttatttgatgaatcttaattgatgcttttaaacacatcttcggacatgttaaacatcaccgtaa 35137320  T
Q  230 aggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||  |||| ||||||||| |||| ||||  |||| |||||||||    
T  35137321 aggttgcatacaattggttcacatcatctaagttggacaaacattttttaataagaa 35137377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 45531320 - 45531212
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || |||||||||||  |||  |||| ||||||| || |||||| |||||||||||| || |||||||||| | | |||||| ||    
T  45531320 atttgatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatttcgaaaaactaatctcaataaatttat 45531221  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  45531220 ttagctttt 45531212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 45250712 - 45250610
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || ||||||||||||||| |||||| ||| | | |||||||||    
T  45250712 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaatgaattgatatgtcgaaaaaccaatctcaataaattgat 45250614  T
Q  132 ttag 135  Q
    ||||    
T  45250613 ttag 45250610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 45916430 - 45916587
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| | | |         |||||||||||    
T  45916430 ttttgtcttgcacaaatgatatattacacatgaactcttatttgatgaatcctaattgatgcttttaaacacatctccggacatgttaaacatcatccta 45916529  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    || |||||||| ||||  |||| |||||||||||||| |||| ||||||| |||||||    
T  45916530 aatgttgcatataattggttcacatcatctaatttggacaaaccttttcttataagaa 45916587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 48811063 - 48810920
Alignment:
Q  137 tttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatat---------tccgacatcatcct 227  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||| |||| ||||||||| |||||||||||| |         |   ||||||||||    
T  48811063 tttttgtcttgcacaaatgatatattacacatgagctcttatttgataaatcctaattgatgcttttaaacacatctctggacatgttaaacatcatcct 48810964  T
Q  228 aaaggttgcatacaatttattcagatcatctaatttgggcaaaa 271  Q
    |||||||||||||||||  |||| |||||| ||||||| |||||    
T  48810963 aaaggttgcatacaattggttcacatcatcaaatttggacaaaa 48810920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 20783628 - 20783472
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaa 229  Q
    ||||||||||||||  | |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||| |         |||||| | |||    
T  20783628 tttgtcttgcacaatgggtatattacacatgaaatcttatttgatgaatcttaattgatgcttttaaacacatcttcggacatgttaaacatcaccgtaa 20783529  T
Q  230 aggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||  |||| ||||||||| |||| |||| |||||||||||||||    
T  20783528 aggttgcatacaattggttcacatcatctaagttggacaaaccttttctaataagaa 20783472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 38353987 - 38354143
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaa 229  Q
    ||||||||||||||  | |||||||||||| || |||| ||||||||||||||||||||| |||||||||||| ||| |         |||||| | |||    
T  38353987 tttgtcttgcacaatgggtatattacacatgaaatcttttttgatgaatcttaattgatgcttttaaacacatcttcggacatgttaaacatcaccgtaa 38354086  T
Q  230 aggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    | |||||||||||||  |||| ||||||||| |||| |||| |||||||||||||||    
T  38354087 atgttgcatacaattggttcacatcatctaagttggacaaaccttttctaataagaa 38354143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 50246178 - 50246036
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg----------acatcatcct 227  Q
    |||||||||||||||||| |||||||||||| | |||||||||||| |||| ||||||||| ||||||||||||  ||||          |||||||| |    
T  50246178 ttttgtcttgcacaaatgatatattacacatgagctcttatttgataaatcctaattgatgcttttaaacacat-ctccgaacatgttgaacatcatcat 50246080  T
Q  228 aaaggttgcatacaatttattcagatcatctaatttgggcaaaa 271  Q
    |||||||||||||||||  |||| |||||||||||||| |||||    
T  50246079 aaaggttgcatacaattggttcacatcatctaatttggacaaaa 50246036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 37198236 - 37198344
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| ||  ||||||||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  37198236 atttgatatagaatcaagaagttagagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 37198335  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  37198336 ttagctttt 37198344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 50246307 - 50246205
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || |||||||||||||||||||||  ||||||| || ||  || ||||||||||||||| |||||||||| | | |||||||||    
T  50246307 atttgatatagaatcaagatgttagagtttagatacattaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatctcaataaattgat 50246209  T
Q  132 ttag 135  Q
    ||||    
T  50246208 ttag 50246205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 20919704 - 20919812
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  20919704 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatctcaataaatttat 20919803  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  20919804 ttagctttt 20919812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 20928666 - 20928774
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  20928666 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatctcaataaatttat 20928765  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  20928766 ttagctttt 20928774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 25773 - 25907
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||||||| |||||||||||| | |||||||||||| |||| |||||||||||||||||||||| | | |         |||||||||||    
T  25773 ttttgtcttgcacaaatgatatattacacatgagctcttatttgataaatcctaattgatgtttttaaacacatctccggacatgttaaacatcatccta 25872  T
Q  229 aaggttgcatacaatttattcagatcatctaattt 263  Q
    ||||||||||||||||  |||| ||||||||||||    
T  25873 aaggttgcatacaattggttcacatcatctaattt 25907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 18590 - 18724
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccgacat---------catccta 228  Q
    |||||||||||||||||| ||||| | |||| | ||||||||||||||||| ||||||||| ||||||||| || | | |||||         |||||||    
T  18590 ttttgtcttgcacaaatgatatatcaaacatgagctcttatttgatgaatcctaattgatgcttttaaacaaatctccagacatgttaaacatcatccta 18689  T
Q  229 aaggttgcatacaatttattcagatcatctaattt 263  Q
    ||||||||||| ||||  |||| ||||||||||||    
T  18690 aaggttgcatataattgcttcatatcatctaattt 18724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 25644 - 25746
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || || |||||||||||| |||||||||| | | |||||||||    
T  25644 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaataaattgatatgtcgaaaaactaatctcaataaattgat 25742  T
Q  132 ttag 135  Q
    ||||    
T  25743 ttag 25746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 27193 - 27332
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||||||||| | | |         |||||||||||    
T  27193 ttttgtcttgcacaaatgatatat--cacatgaactcttatttgatgaatcctaattgatgtttttaaacacatctccggacatgttaaacatcatccta 27290  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaa 270  Q
    || ||||||||||||| ||||| |||||||||||||| ||||    
T  27291 aatgttgcatacaattgattcacatcatctaatttggacaaa 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 27064 - 27166
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || || |||||||||||||| |||  ||||||| || ||  || ||||||| ||||||| |||||||||| | | |||||||||    
T  27064 atttgatatagaatcaagatgatagagtttagataccttaggttgattgaatatt-tttaatgaattaatatgtcgaaaaactaatctcaataaattgat 27162  T
Q  132 ttag 135  Q
    ||||    
T  27163 ttag 27166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 7946069 - 7945912
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatccta 228  Q
    |||||||||||||| ||| |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||| | | |         |||||||||||    
T  7946069 ttttgtcttgcacatatgatatattacacatgaactattatttgatgaatcctaattgatgcttttaaacacatctccggacatgttaaacatcatccta 7945970  T
Q  229 aaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    ||||||||||||||||  |||  |||||||||||||  ||||  |||||| |||||||    
T  7945969 aaggttgcatacaattggttcccatcatctaatttgcacaaacattttcttataagaa 7945912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 29494613 - 29494681
Alignment:
Q  218 acatcatcctaaaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||| |||| ||||||| |||||||    
T  29494613 acatcatcctaaaggttgcatacaattggttcaaatcatctaatttggacaaaccttttcttataagaa 29494681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 7946193 - 7946092
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || ||||||||||||||||| |||  ||||||| || ||  || ||||||||||||||| |||||||||||| | ||||| |||    
T  7946193 atttgatatagaatcaagatgttagagtttagataccttaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatttcaataaatcgat 7946095  T
Q  132 tta 134  Q
    |||    
T  7946094 tta 7946092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 14252790 - 14252638
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccgacat------catcctaaagg 232  Q
    ||||||||||||||  | |||||||||||| || ||||||||||||||||| |||||||| |||||||||||| ||  |||||      |||  ||||||    
T  14252790 tttgtcttgcacaatgggtatattacacatgaaatcttatttgatgaatctgaattgatgcttttaaacacatctttggacatgttaaacat-ataaagg 14252692  T
Q  233 ttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    ||||||||||||  |||| ||||||||| |||| |||| || ||||||||||||    
T  14252691 ttgcatacaattggttcacatcatctaagttggacaaacctattctaataagaa 14252638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 16311304 - 16311195
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || ||||||||||||||||| |||| ||||||| || |||||| || |||| ||||||| ||||| |||| | | |||||||||    
T  16311304 atttgatatagaatcaagatgttagagtttagataccttatgttgattgaatattacttaataaattaatatgtcgaaaaattaatctcaataaattgat 16311205  T
Q  132 ttagcttttt 141  Q
    ||||||||||    
T  16311204 ttagcttttt 16311195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 20104041 - 20104197
Alignment:
Q  139 tttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaa 229  Q
    ||||||||| ||||  | |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||  |         |||||| | |||    
T  20104041 tttgtcttgtacaatgggtatattacacatgaaatcttatttgatgaatcttaattgatgcttttaaacacatcttgggacatgttaaacatcaccgtaa 20104140  T
Q  230 aggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||  |||| ||||||||| |||| ||||  ||||||||||||||    
T  20104141 aggttgcatacaattggttcacatcatctaagttggacaaactttttctaataagaa 20104197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 41747810 - 41747918
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || ||||| |||||| |||| |||| ||||||| || |||||| ||||||||||||||| |||||||||| | | |||||| ||    
T  41747810 atttgatatagaatcaagatgttaaagtttatataccttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaatatcaataaatttat 41747909  T
Q  132 ttagctttt 140  Q
    |||||||||    
T  41747910 ttagctttt 41747918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 16139820 - 16139972
Alignment:
Q  143 tcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccgac---------atcatcctaaaggt 233  Q
    |||||||||| || ||| |||||||| || | ||||||||||||||||||||||||||||||||||| | |   |||         ||||||||||||||    
T  16139820 tcttgcacaagtggtatgttacacatgaaattttatttgatgaatcttaattgatgtttttaaacacgtctctggacatgttaaagatcatcctaaaggt 16139919  T
Q  234 tgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||  |||| ||||||||| || | ||||  ||||||||||||||    
T  16139920 tgcatacaattggttcacatcatctaagtttgacaaactttttctaataagaa 16139972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 24971850 - 24971748
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaatttaagtaaattgat 131  Q
    ||||||||||||||| || |||||||||||||||||||||  ||||||| || ||  || ||||||||||||||| |||||||||| | | |||||||||    
T  24971850 atttgatatagaatcaagatgttagagtttagatacattaggttgattgaatatt-tttaatgaattgatatgtcgaaaaactaatctcaataaattgat 24971752  T
Q  132 ttag 135  Q
    ||||    
T  24971751 ttag 24971748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 24971721 - 24971648
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacat 211  Q
    |||||||||||||| ||| ||||| |||||| | |||||||||||| |||| ||||||||| ||||||||||||    
T  24971721 ttttgtcttgcacagatgatatatcacacatgagctcttatttgataaatcataattgatgcttttaaacacat 24971648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 21124732 - 21124879
Alignment:
Q  148 cacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccg---------acatcatcctaaaggttgcat 238  Q
    |||||||| ||||| |||||| | |||||||||||| |||| ||||||||| |||||||||||| ||  |         |||||||||||||||||||||    
T  21124732 cacaaatgatatatcacacatgagctcttatttgataaatcctaattgatgcttttaaacacatcttaagacatgttaaacatcatcctaaaggttgcat 21124831  T
Q  239 acaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||   |||| |||||| ||||| | |||| ||||||| |||||||    
T  21124832 acaatagtttcacatcatcaaatttagacaaaccttttcttataagaa 21124879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 16311104 - 16311036
Alignment:
Q  218 acatcatcctaaaggttgcatacaatttattcagatcatctaatttgggcaaaacttttctaataagaa 286  Q
    |||||||||||||||||||||||| ||  |||| ||||| |||||||| |||| ||||| || ||||||    
T  16311104 acatcatcctaaaggttgcatacagttggttcacatcatataatttggacaaaccttttttagtaagaa 16311036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 27589157 - 27589240
Alignment:
Q  138 ttttgtcttgcacaaatgttatattacacataaactcttatttgatgaatcttaattgatgtttttaaacacatattccgacat 221  Q
    |||||||||||||| ||| ||||| |||||| | |||||||||||| |||| ||||||||| |||||||||||| ||| |||||    
T  27589157 ttttgtcttgcacagatgatatatcacacatgagctcttatttgataaatcataattgatgcttttaaacacatcttcggacat 27589240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 9662714 - 9662629
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 117  Q
    ||||||||||||||| || |||||||||||| |||| |||| ||||||| || ||| || ||||||||||||||| ||||||||||    
T  9662714 atttgatatagaatcaagatgttagagtttatataccttatgttgattgaatattatttaatgaattgatatgtcgaaaaactaat 9662629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 66867 - 66782
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 117  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| ||||||||||    
T  66867 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaat 66782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 74972 - 74887
Alignment:
Q  33 atttgatatagaatcgagttgttagagtttagatacattatcttgattgcatgttacttgatgaattgatatgtc-aaaaactaat 117  Q
    |||| |||||||||| || |||||||||||  |||  |||| ||||||| || |||||| ||||||||||||||| ||||||||||    
T  74972 attttatatagaatcaagatgttagagtttgtatatcttatgttgattgaatattacttaatgaattgatatgtcgaaaaactaat 74887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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