View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20389_high_9 (Length: 215)

Name: NF20389_high_9
Description: NF20389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20389_high_9
NF20389_high_9
[»] chr5 (3 HSPs)
chr5 (61-215)||(33658020-33658176)
chr5 (118-190)||(39173518-39173590)
chr5 (127-190)||(14274750-14274813)
[»] chr6 (1 HSPs)
chr6 (133-190)||(21729776-21729833)
[»] chr3 (2 HSPs)
chr3 (133-198)||(40927322-40927387)
chr3 (121-190)||(51140103-51140172)
[»] chr1 (2 HSPs)
chr1 (133-190)||(14651069-14651126)
chr1 (133-190)||(14660860-14660917)
[»] chr2 (1 HSPs)
chr2 (137-190)||(8323485-8323538)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 33658176 - 33658020
Alignment:
Q  61 tattgaaagtttaaagtgaaggaatatctcccaaaatgtgtaatatannnnnnnnnnagcaaaagcaaaatcaatgcatttcattaataattaaagagta 160  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||          || |||||||||||||||| |||||||||||||||||||||||    
T  33658176 tattgaaagtttaaagcgaaggaatatctcccaaaatgtgtaatatattttttttt-agtaaaagcaaaatcaatgtatttcattaataattaaagagta 33658078  T
Q  161 catatcat---gaggtacattatagaagatatgcgggatagtatgtgacacagatgct 215  Q
    ||||||||   |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33658077 catatcatcatgaggtacactatagaagatatgcgggatagtatgtgacacggatgct 33658020  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 39173518 - 39173590
Alignment:
Q  118 agcaaaagcaaaatcaatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    |||||||| | ||| ||||||||||||||||||||| |||||||| |||||| || ||| |||| ||||||||    
T  39173518 agcaaaagtagaattaatgcatttcattaataattatagagtacacatcatgtggaacaatataaaagatatg 39173590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 14274750 - 14274813
Alignment:
Q  127 aaaatcaatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||| ||| ||||||||||||||||| |||||||| |||||| |||||| ||||  |||||||    
T  14274750 aaaattaatacatttcattaataattatagagtacaaatcatgtggtacaatataatagatatg 14274813  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 21729776 - 21729833
Alignment:
Q  133 aatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||||||||||||||||||| |||||||| |||||| |||||| |||| ||||||||    
T  21729776 aatgcatttcattaataattatagagtacacatcatgtggtacaatataaaagatatg 21729833  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 40927322 - 40927387
Alignment:
Q  133 aatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatgcgggatag 198  Q
    ||||||||||||||||||||| |||||||| |||||  |||||| |||| || ||||| |||||||    
T  40927322 aatgcatttcattaataattatagagtacagatcatctggtacaatataaaaaatatgggggatag 40927387  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 51140103 - 51140172
Alignment:
Q  121 aaaagcaaaatcaatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||||| ||| ||||||||||||||||||||| |||||||| |||||  | |||| |||| ||||||||    
T  51140103 aaaagcagaattaatgcatttcattaataattatagagtacagatcatctgatacaatataaaagatatg 51140172  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 14651126 - 14651069
Alignment:
Q  133 aatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||||||||||||||||||| |||||||| |||||| |||| | |||| ||||||||    
T  14651126 aatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatg 14651069  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 14660917 - 14660860
Alignment:
Q  133 aatgcatttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||||||||||||||||||| |||||||| |||||| |||| | |||| ||||||||    
T  14660917 aatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatg 14660860  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 8323485 - 8323538
Alignment:
Q  137 catttcattaataattaaagagtacatatcatgaggtacattatagaagatatg 190  Q
    ||||||||||||||||| || ||||| |||||| || |||||||| ||||||||    
T  8323485 catttcattaataattatagcgtacacatcatgtggaacattataaaagatatg 8323538  T

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