View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20389_low_1 (Length: 610)
Name: NF20389_low_1
Description: NF20389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20389_low_1 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 15 - 610
Target Start/End: Complemental strand, 32719023 - 32718430
Alignment:
| Q |
15 |
cacagaccagaaatagcagaacgcagcgattgaatcactgcaaacagatggcaaaaacatcgcaggcagccacccccctgaaccaaaaccacttccaaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
32719023 |
cacagaccagaaatagcagaacgcagcgattgaatcactgcaaacagatggcaaaaacattgcaggcagccacccccctgaaccaaaaccgcttccaaca |
32718924 |
T |
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| Q |
115 |
aagtacatatttagcgagaagaaacatcccctgatacccctaagcatgctagagaggattcaaccagcactttcaaatcatacttaaactttgacgactt |
214 |
Q |
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||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32718923 |
aagcacatatttagcgagaacaaacatcccctgatacctctaagcatgctagaggg--ttcaaccagcactttcaaatcatacttaaactttgacgactc |
32718826 |
T |
|
| Q |
215 |
taatctctgccaactccacgataaaagcttgacactgtccataatcgattcattatctcaatccttatgatgaaaaatccttgcatttctcgccttcgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32718825 |
taatctctgccaactccacgataaaagcttgacactgtccataatcgattcatcatctcaatccttatgatgaaaaatccttgcatttctcgccttcgaa |
32718726 |
T |
|
| Q |
315 |
atgttccacatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttacgggaaccagccctgtaaatgtaataaagtggatggtactca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32718725 |
atgttccacatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccctgtaaatgtaataaagtggatggtactca |
32718626 |
T |
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| Q |
415 |
tagtgtgaaacaccacctgtacacaaatccattgcgcaattctgaaccagacttttgagacagtcgggcaagcaaaaaataagtggttggaagtctatct |
514 |
Q |
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|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32718625 |
tattgtgaaacaccacctgtacaccaagccattgcgcaattctgaaccagacttttgagacagtcgggcaagcaaaaaataagtggttggaagtctatct |
32718526 |
T |
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| Q |
515 |
ctccacatcctcctatgcaatgtaactcctccctacctataattcctcttctacatagattgtccttggatggaatacgattttgcattacctgcc |
610 |
Q |
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| T |
32718525 |
ctccacatcctcctatgcaatgtaactcctccctacctataattcctcttctacatagattgtcctcggatggaatacgattttgcattacctgcc |
32718430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 26 - 497
Target Start/End: Original strand, 9579259 - 9579727
Alignment:
| Q |
26 |
aatagcagaacgcagcgattgaatcactgcaaacagatggca-aaaacatcgcaggcagccacccccctgaaccaaaaccacttccaacaaagtacatat |
124 |
Q |
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| T |
9579259 |
aatagcagaacgcagcgactgcatcactgcaaacagatagcacaaaacaacgcag-cagccacccccctgaaacaaaactgcttccaataatgcacatat |
9579357 |
T |
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| Q |
125 |
ttagcgagaagaaacatcccctgatacccctaagcatgctagagaggattcaaccagcact--ttcaaatcatacttaaactttgacgactttaatctct |
222 |
Q |
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| T |
9579358 |
ttagcaaaaacaaacatccactgatacccctaagcatgctagcggg--ttcgaccaccactggttcaatccatacataaactttgacgactttaatctca |
9579455 |
T |
|
| Q |
223 |
gccaactccacgataaaagcttgacactgtccataatcgattcattatctcaatccttatgatgaaaaatccttgcatttctcgccttcgaaatgttcca |
322 |
Q |
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| T |
9579456 |
accaactcgatgataaaagattgacactatcgacaatcgattcagtatc-caatccttataatgaaaaatcctttcatttctcgccttccaaatgctcca |
9579554 |
T |
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| Q |
323 |
catactcgcgaaccagatggcttccagtccctgaactgcatcttttgttacgggaaccagccctgtaaatgtaataaagtggatggtactcatagtgtga |
422 |
Q |
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|||||||| |||||| |||||||| ||| |||||||||||||||| || || |||||||||||||||| |||||||||| |||||||| ||| ||||| |
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| T |
9579555 |
catactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtcac--gaaccagccctgtaaaggtaataaagttgatggtacacat--tgtga |
9579650 |
T |
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| Q |
423 |
aacaccacctgtacacaaatccattgcgcaattctgaaccagac--ttttgagacagtcgggcaagcaaaaaataag |
497 |
Q |
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| T |
9579651 |
aacaccacttgtactcccagccaatgcgcaattccgaaccatacttttttgatacagttgggcaagcaaaacataag |
9579727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 9584866 - 9585116
Alignment:
| Q |
98 |
caaaaccacttccaacaaagtacatatttagcgagaagaaacatcccctgatacccctaagcatgctagagaggattcaaccagcact--ttcaa-at-- |
192 |
Q |
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| T |
9584866 |
caaaaccgcttccaagaatgcaaatatttagcaaaaacaaacatcccccgatacccctaagcatgctagcggg--ttcgaccaccactggttcaatattc |
9584963 |
T |
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| Q |
193 |
catacttaaactttgacgactttaatctctgccaactccacgataaaagcttgacactgtccataatcgattcattatctcaatccttatgatgaaaaat |
292 |
Q |
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||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||| | | || | ||||| |||| ||||||||||||||||||| |
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| T |
9584964 |
catacataaactttgacgactttaatctcaaccaactcaatgataaaagcttgacactatggacaagcaattcagtatc-caatccttatgatgaaaaac |
9585062 |
T |
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| Q |
293 |
ccttgcatttctcgccttcgaaatgttccacatactcgcgaaccagatggcttc |
346 |
Q |
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| T |
9585063 |
ccttgcatttctcgccttcaaaatgctccacatactcgcgaaccaaatggcttc |
9585116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 403 - 607
Target Start/End: Original strand, 9585158 - 9585365
Alignment:
| Q |
403 |
ggatggtactcatagtgtgaaacaccacctgtacacaaatccattgcgcaattctgaaccagacttttgagacagtcgggcaagcaaaaaataagtggtt |
502 |
Q |
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||||||||| |||| ||||||| |||| |||||| | | ||| ||| |||||| |||||| |||||| ||||||||||| ||||||||||||||| | |
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| T |
9585158 |
ggatggtacacataatgtgaaataccatctgtactcccagccaatgcacaattccgaaccatacttttcttacagtcgggcatgcaaaaaataagtggct |
9585257 |
T |
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| Q |
503 |
ggaagtctat--ctctccacatcctcctatgcaa-tgtaactcctccctacctataattcctcttctacatagattgtccttggatggaatacgattttg |
599 |
Q |
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||||| | | ||||| ||||||| |||||||| |||||||| | ||||||||||||| || ||||||||| ||||||||| |||||||||| |||||| |
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| T |
9585258 |
agaagtatgtgtctctctacatccttctatgcaaatgtaactcttacctacctataatttcttttctacataaattgtcctttgatggaatacaattttg |
9585357 |
T |
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| Q |
600 |
cattacct |
607 |
Q |
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|||||||| |
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| T |
9585358 |
cattacct |
9585365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 527 - 610
Target Start/End: Original strand, 9579734 - 9579817
Alignment:
| Q |
527 |
ctatgcaatgtaactcctccctacctataattcctcttctacatagattgtccttggatggaatacgattttgcattacctgcc |
610 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||| |
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| T |
9579734 |
ctatacaatgtaactcatccctacctataattcctcttctacatggactgtgcttgggtggaatacgattttgcattacctgcc |
9579817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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