View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20389_low_3 (Length: 360)
Name: NF20389_low_3
Description: NF20389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20389_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 53866924 - 53867261
Alignment:
| Q |
18 |
attaattctgtatgtcagccgctcacacgttctttaatattttcactttttaatgcttctcattagtgattttcagacattatctcaaccggatttattg |
117 |
Q |
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| T |
53866924 |
attaattctgtatgtcagccgctcacacgttctttaatattttcactttttaatgcttctcattagtgattttcagacattatctcaaccggatttattg |
53867023 |
T |
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| Q |
118 |
taatatacaaattgaaatttaatcacattttttcactccttcaggatgggtatttgcaacctgaagaacttaaagaattgttttctactgccccggaaag |
217 |
Q |
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| T |
53867024 |
taatatacaaattgaaatttaatcacattttttcactccttcaggatgggtatttgcaacctgaagaacttaaagaattgttttctactgccccggaaag |
53867123 |
T |
|
| Q |
218 |
gtagattgctttctcacattttttgctatacttatttttactttattatcatccatttcatgcttgattaatttgcattggtttcttctttaattgataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53867124 |
gtagattgctttctcacattttttgctatacttattttcactttattatcatccatttcatgcttgattaatttgcattggtttcttctttaattgataa |
53867223 |
T |
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| Q |
318 |
tggggcagtttgatctggaatggttcctatgtcctttg |
355 |
Q |
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| T |
53867224 |
tggggcagtttgatctggaatggttcctatgtcctttg |
53867261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 54160267 - 54160144
Alignment:
| Q |
170 |
tttgcaacctgaagaacttaaagaattgttttctactgccccggaaaggtagattgctttctcacattttttgctatacttatt-tttactttattatca |
268 |
Q |
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| T |
54160267 |
tttgcaacctgaagaacttgaagaattgttttttactgccccagaaaggtagattgctttctcacattttttgctacactttttgtttactttattatcc |
54160168 |
T |
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| Q |
269 |
tccatttcatgcttgattaatttg |
292 |
Q |
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| T |
54160167 |
accatttcatggtggattagtttg |
54160144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 36874857 - 36874901
Alignment:
| Q |
183 |
gaacttaaagaattgttttctactgccccggaaaggtagattgct |
227 |
Q |
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| T |
36874857 |
gaacttgaagaattgttttccactgccccggaaaggtagattgct |
36874901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 15049779 - 15049735
Alignment:
| Q |
183 |
gaacttaaagaattgttttctactgccccggaaaggtagattgct |
227 |
Q |
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|||||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
15049779 |
gaacttgaagaactgttttctactgctccggaaaggtagattgct |
15049735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 17882302 - 17882255
Alignment:
| Q |
183 |
gaacttaaagaattgttttctactgccccggaaaggtagattgctttc |
230 |
Q |
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|||||||||||||||||||||||||| || || ||||||| ||||||| |
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| T |
17882302 |
gaacttaaagaattgttttctactgctccagacaggtagactgctttc |
17882255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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