View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2038_high_1 (Length: 917)

Name: NF2038_high_1
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2038_high_1
NF2038_high_1
[»] chr1 (23 HSPs)
chr1 (121-502)||(7101275-7101662)
chr1 (664-910)||(7103999-7104253)
chr1 (578-668)||(7102883-7102973)
chr1 (18-75)||(7101217-7101274)
chr1 (119-307)||(24241474-24241661)
chr1 (852-910)||(7104290-7104348)
chr1 (595-656)||(7587486-7587547)
chr1 (121-306)||(16253026-16253211)
chr1 (846-910)||(15321060-15321124)
chr1 (193-307)||(21356790-21356901)
chr1 (122-307)||(34773347-34773532)
chr1 (193-309)||(39744169-39744282)
chr1 (120-294)||(41942790-41942962)
chr1 (425-516)||(45417855-45417944)
chr1 (843-885)||(45967843-45967885)
chr1 (423-516)||(29147770-29147862)
chr1 (202-307)||(2344965-2345068)
chr1 (423-502)||(50882007-50882084)
chr1 (423-501)||(6143781-6143857)
chr1 (438-516)||(44294098-44294175)
chr1 (423-516)||(8447819-8447910)
chr1 (423-516)||(47215626-47215718)
chr1 (449-514)||(49241427-49241491)
[»] chr5 (20 HSPs)
chr5 (120-307)||(10719742-10719929)
chr5 (122-307)||(2976378-2976555)
chr5 (120-308)||(20524529-20524716)
chr5 (198-307)||(8026463-8026574)
chr5 (193-307)||(33758790-33758901)
chr5 (423-516)||(9226383-9226475)
chr5 (144-308)||(34849437-34849600)
chr5 (843-909)||(973127-973193)
chr5 (423-501)||(34270425-34270501)
chr5 (199-284)||(23151436-23151518)
chr5 (202-293)||(30319817-30319906)
chr5 (121-283)||(37872128-37872291)
chr5 (423-481)||(189600-189657)
chr5 (223-310)||(36442077-36442160)
chr5 (423-501)||(43441836-43441912)
chr5 (841-906)||(7113610-7113675)
chr5 (423-516)||(8675330-8675421)
chr5 (423-516)||(15008447-15008538)
chr5 (122-163)||(20654461-20654502)
chr5 (423-516)||(34888705-34888797)
[»] chr2 (14 HSPs)
chr2 (119-294)||(30706075-30706250)
chr2 (122-307)||(3870020-3870208)
chr2 (193-307)||(11028775-11028887)
chr2 (193-308)||(6512079-6512196)
chr2 (122-255)||(4848117-4848248)
chr2 (122-308)||(37721444-37721629)
chr2 (122-307)||(38879513-38879697)
chr2 (423-519)||(22525893-22525987)
chr2 (207-303)||(36400857-36400952)
chr2 (424-516)||(34119550-34119640)
chr2 (423-501)||(9377554-9377630)
chr2 (423-501)||(14233615-14233692)
chr2 (214-307)||(29685491-29685582)
chr2 (423-519)||(16677750-16677847)
[»] chr7 (20 HSPs)
chr7 (120-292)||(46023139-46023311)
chr7 (122-304)||(30783412-30783589)
chr7 (121-307)||(34998524-34998710)
chr7 (122-308)||(8541426-8541609)
chr7 (214-306)||(39187980-39188068)
chr7 (122-306)||(45627340-45627527)
chr7 (121-176)||(32677070-32677125)
chr7 (843-909)||(757935-758001)
chr7 (425-483)||(16980411-16980468)
chr7 (144-239)||(15878700-15878796)
chr7 (423-516)||(46532585-46532677)
chr7 (857-908)||(29152482-29152532)
chr7 (193-307)||(10544987-10545100)
chr7 (423-481)||(42555681-42555738)
chr7 (423-501)||(43573440-43573516)
chr7 (423-501)||(44184456-44184532)
chr7 (423-516)||(4713656-4713748)
chr7 (423-516)||(33180607-33180698)
chr7 (423-516)||(35452469-35452561)
chr7 (423-516)||(44304006-44304098)
[»] chr3 (18 HSPs)
chr3 (124-306)||(47169243-47169429)
chr3 (193-303)||(1994850-1994957)
chr3 (120-239)||(39170903-39171021)
chr3 (193-308)||(22220205-22220318)
chr3 (122-308)||(45805455-45805645)
chr3 (421-518)||(46139699-46139794)
chr3 (120-181)||(25199064-25199125)
chr3 (423-516)||(36412206-36412298)
chr3 (193-307)||(2008395-2008508)
chr3 (193-286)||(39056875-39056964)
chr3 (423-502)||(21196221-21196298)
chr3 (193-251)||(28297723-28297782)
chr3 (438-501)||(39697133-39697195)
chr3 (423-514)||(46852029-46852118)
chr3 (423-481)||(3953372-3953429)
chr3 (423-516)||(6999253-6999344)
chr3 (423-484)||(37927101-37927162)
chr3 (423-516)||(51465811-51465902)
[»] chr4 (12 HSPs)
chr4 (122-304)||(17056614-17056793)
chr4 (124-308)||(20679770-20679956)
chr4 (193-295)||(47833503-47833603)
chr4 (121-304)||(39503431-39503616)
chr4 (119-303)||(46550629-46550813)
chr4 (122-259)||(47541737-47541876)
chr4 (193-286)||(36364868-36364954)
chr4 (423-501)||(39344877-39344953)
chr4 (423-516)||(33860729-33860821)
chr4 (122-174)||(36364605-36364657)
chr4 (121-174)||(15827051-15827104)
chr4 (423-516)||(18882872-18882963)
[»] chr8 (21 HSPs)
chr8 (438-516)||(43397655-43397733)
chr8 (122-312)||(36132667-36132854)
chr8 (122-307)||(30208195-30208379)
chr8 (122-308)||(40719821-40720010)
chr8 (123-291)||(31333091-31333258)
chr8 (820-897)||(34695821-34695899)
chr8 (193-303)||(42056680-42056787)
chr8 (122-259)||(1162045-1162183)
chr8 (423-481)||(31597065-31597122)
chr8 (203-307)||(35179156-35179258)
chr8 (423-516)||(29440419-29440511)
chr8 (841-910)||(32166627-32166696)
chr8 (438-484)||(9549110-9549156)
chr8 (118-176)||(16782307-16782365)
chr8 (205-303)||(39402038-39402136)
chr8 (245-302)||(6048653-6048710)
chr8 (423-516)||(20174767-20174859)
chr8 (423-516)||(20219494-20219586)
chr8 (423-516)||(30439403-30439494)
chr8 (423-516)||(36424498-36424590)
chr8 (423-516)||(38708191-38708283)
[»] scaffold1339 (1 HSPs)
scaffold1339 (193-308)||(57-170)
[»] chr6 (10 HSPs)
chr6 (423-516)||(31749448-31749539)
chr6 (193-307)||(7080149-7080262)
chr6 (125-172)||(2141175-2141222)
chr6 (120-174)||(994876-994930)
chr6 (423-481)||(2688961-2689019)
chr6 (423-481)||(35213458-35213515)
chr6 (253-294)||(994874-994915)
chr6 (423-516)||(1369443-1369534)
chr6 (423-516)||(13143279-13143370)
chr6 (423-516)||(26832729-26832820)
[»] scaffold0830 (1 HSPs)
scaffold0830 (193-278)||(5379-5462)
[»] scaffold0009 (1 HSPs)
scaffold0009 (122-184)||(25955-26017)
[»] scaffold0532 (1 HSPs)
scaffold0532 (423-516)||(11047-11138)
[»] scaffold0288 (1 HSPs)
scaffold0288 (119-174)||(17974-18030)
[»] scaffold0095 (1 HSPs)
scaffold0095 (205-303)||(35366-35464)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 121 - 502
Target Start/End: Original strand, 7101275 - 7101662
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata--aagaaatannnnnnnnaa-----tagtaaagaggaaattgat 213  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||  ||||||||         |     |  ||||||||||||||||    
T  7101275 agagaaattctaacatggttacgtgatcaaataaaaagtgtttggtcacacacatataaagaaatatttttaaggaccatcttttaaagaggaaattgat 7101374  T
Q  214 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaaaat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  7101375 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgggagaatacctcaaaaat 7101474  T
Q  314 tactttcttatctttgtttcaaacattttttctgttatttaatagtattatttattgttttgactgtttcaaaagaaatattggtgattacattnnnnnn 413  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  7101475 tactttcttaactttgtttcaaacaatttttctgttatttaatagtattatttattgttttgactgtttcaaaagaaatattggtgattacattaaaaaa 7101574  T
Q  414 nngaagttgtatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaat 502  Q
        |||  ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101575 gatgagtgttatttgaacaacca-tttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaat 7101662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 664 - 910
Target Start/End: Original strand, 7103999 - 7104253
Alignment:
Q  664 ttcaccgttagatagatgtactagtagttttaactttt---------ccggtggaacagacagacacgggaagtttactagtctagctcaaaattattat 754  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7103999 ttcaccgttagatagatgtactagtagttttaacttttaataaatttccggtggaacagacagacacgggaagtttactagtctagctcaaaattattat 7104098  T
Q  755 cttttctaaattattttcttgataaattggggtaggttatccttataatagaaaaatc-nnnnnnncttcgtctttattcttgcaataattatcattttc 853  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||  ||||||    
T  7104099 cttttctaagttattttcttgataaattggggtaggttatccttataatagaaaaatcttttttttctttgtctttattcttgcaataatta--attttc 7104196  T
Q  854 ttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctct 910  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7104197 ttatcaaaaatattaaatttcttcatctccttcatgcaacatgtaatattcatctct 7104253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 578 - 668
Target Start/End: Original strand, 7102883 - 7102973
Alignment:
Q  578 taaaatatgagcgaatgtaatgctagaaagttgtcaaagtggttggtcaatctgcagcaaaattgtggtaggtcttgcaccacttattcac 668  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7102883 taaaatatgagtgaatgtaatgctagaaagttgttaaagtggttggtcaatctgcagcaaaattgtggtaggtcttgcaccacttattcac 7102973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7101217 - 7101274
Alignment:
Q  18 gtaagtgataagaattgtgcaataatgcagtggttgttgcaccacaattactttgaag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101217 gtaagtgataagaattgtgcaataatgcagtggttgttgcaccacaattactttgaag 7101274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 119 - 307
Target Start/End: Complemental strand, 24241661 - 24241474
Alignment:
Q  119 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaa 216  Q
    ||||||||||||||||||||| |   ||||||| ||||||| ||||||||||||||  |||| || ||        |||| ||| |||||||||||||||    
T  24241661 taagagaaattctaatatggtcacaggaccaaagaaaaagtatttggtcacacacacataaaaaagtattttttttaataataaggaggaaattgataaa 24241562  T
Q  217 aga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
    | | ||||||||||||||| ||||  ||||||||||||||||||    ||||||| ||||||||||||| | ||||||| | ||||||||||    
T  24241561 aaagatgattgaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtcatgtgaccatggaagaatacctc 24241474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 852 - 910
Target Start/End: Original strand, 7104290 - 7104348
Alignment:
Q  852 tcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctct 910  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7104290 tcttatcaagaatattaaatttcttcatctccttcattcaacatgtaatattcatctct 7104348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 7587547 - 7587486
Alignment:
Q  595 taatgctagaaagttgtcaaagtggttggtcaatctgcagcaaaattgtggtaggtcttgca 656  Q
    ||||| ||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||    
T  7587547 taatgttagaaagttggtaaagtagttggtcaatgtgcagcaaaattgtggtaggtcttgca 7587486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 306
Target Start/End: Complemental strand, 16253211 - 16253026
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca--cacataaagaaata-nnnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    ||||||||||||||||| | |  ||| |||| ||||||||||||||||||  |||||||| ||| |         |||| ||| ||||||||||||||||    
T  16253211 agagaaattctaatatgatcacatgatcaaagaaaaagtgtttggtcacacacacataaaaaaaaatatttttttaataataaggaggaaattgataaaa 16253112  T
Q  218 ga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 306  Q
     | ||||||||||||||| ||||  |||||||||||||||| |    ||||||| ||||||||||||||| ||| ||| | |||||||||    
T  16253111 aagatgattgaatattttgaggagaatctttttatgtgtgtct----ccaaacattattgatttggtcttgtgaacatggaagaatacct 16253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 846 - 910
Target Start/End: Original strand, 15321060 - 15321124
Alignment:
Q  846 tcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctct 910  Q
    |||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| |||||||||    
T  15321060 tcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctct 15321124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 21356901 - 21356790
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||| | ||  |||||||||| |||||||    ||||||| ||||||||||||||| ||||    
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgt----ccaaacattattgatttggtcttgtgac 21356806  T
Q  292 cataggagaatacctc 307  Q
    ||||  ||||||||||    
T  21356805 cataaaagaatacctc 21356790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 34773347 - 34773532
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca--cataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    ||||||||||||||||||||   ||||||| |||||||||||| |||||||  || |||||| |         |||| |||| |||||||| |||||| |    
T  34773347 gagaaattctaatatggttacaggaccaaagaaaaagtgtttgatcacacatacaaaaagaagtgttttttttaataataaa-aggaaattaataaaaaa 34773445  T
Q  220 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
     ||||||||||||||| ||||  |||||||||  ||||||||||  |||||| |||||| |||||||| ||| ||| | ||||||||||    
T  34773446 tatgattgaatattttgaggagaatcttttta--tgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaatacctc 34773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 39744169 - 39744282
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| ||| ||||||| |||||||| || ||||||| |||| | || |  |||||||||| |||||||    ||||||| ||||||||||||||| ||||    
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgt----ccaaacattattgatttggtcttgtgac 39744264  T
Q  292 cataggagaatacctcaa 309  Q
    ||||| ||||||||||||    
T  39744265 catagaagaatacctcaa 39744282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 41942962 - 41942790
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtca--cacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    |||||||||||||||||||| |   ||||||| | ||||||||||||||  ||||||||||||| ||        |||| ||| ||||||||||||||||    
T  41942962 aagagaaattctaatatggtcacacgaccaaagataaagtgtttggtcatacacacataaagaagtattttttt-aataataaggaggaaattgataaaa 41942864  T
Q  218 ga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccat 294  Q
       ||||||||||||||  | ||  |||||||||||| |||||    ||||||| ||||||||||||||| |||||||    
T  41942863 atgatgattgaatatttcgaagagaatctttttatgtatgtgt----ccaaacattattgatttggtcttgtgaccat 41942790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 425 - 516
Target Start/End: Complemental strand, 45417944 - 45417855
Alignment:
Q  425 tttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||| ||||| ||||||||||||  | ||||| ||||||||| |||| |||||| | |||||||||||||||| || ||||||||||    
T  45417944 tttgaacaaccattt-gattgacaacttatgtgacaaccataatttataaagaaaaaat-atgtatttgcacgaaaatcaaaacaatagaga 45417855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 843 - 885
Target Start/End: Complemental strand, 45967885 - 45967843
Alignment:
Q  843 ttatcattttcttatcaaaaatattaaatttcttcatctcctt 885  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  45967885 ttatcattttcatttcaaaaatattaaatttcttcatctcctt 45967843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 29147770 - 29147862
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||||| |||| |||| || ||  | ||||| ||||||||||||||||||| |||| |||||||||| |||  || ||||||||||    
T  29147770 tatttgaacaatcaatttggttgataatttatgtgacaaccataatttacaaaggaaaagtaaa-tatttgcacggaaaccaaaacaatagaga 29147862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 2345068 - 2344965
Alignment:
Q  202 gaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggaga 300  Q
    |||||||||||||||| | |||||||||| |||||| ||  || ||||||||||||  |||  ||||||| ||||||||||||||| ||||||  | |||    
T  2345068 gaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttat--ccaaacattattgatttggtcttgtgaccaaggaaga 2344972  T
Q  301 atacctc 307  Q
    |||||||    
T  2344971 atacctc 2344965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 50882007 - 50882084
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaat 502  Q
    ||||||||||| ||||| ||||||||| ||  | ||||||||||||||| |||| ||||||  |||||||||||||||||    
T  50882007 tatttgaacaaccattt-gattgacaatttatgtgacaatcataatttataaagaaaaaat-gagtatttgcacgaaaat 50882084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 6143857 - 6143781
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||||||||| | |||||||| ||  |||||| ||||||||||||| ||||||  | |||||||||||||||    
T  6143857 tatttgaacaatcatttgg-ttgacaacatttaagacaaccataatttacaaa-gaaaaagtaggtatttgcacgaaaa 6143781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 516
Target Start/End: Complemental strand, 44294175 - 44294098
Alignment:
Q  438 tttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||||||| | |||||  |||||||| |||| |||||| || ||||||||||||||| || ||||| ||||    
T  44294175 tttgattgacaacttttgggacaactataatttataaagaaaaaattaa-tatttgcacgaaaatcaaaacaattgaga 44294098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 8447910 - 8447819
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||||||||| | |||| |||||  | |||||||||||||||||||| |||| |  | ||||||||| |||| ||| ||||||||||    
T  8447910 tatttgaacaatcatttag-ttgataacttatgtgacaatcataatttacaaagaaaaagttga-tatttgcacaaaaactaaaacaatagaga 8447819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 47215626 - 47215718
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||  | |||| |||| |||||| | ||||| ||||||||| |||| |||||| | ||||||||||| ||| ||| ||||||||||    
T  47215626 tatttgaacaactaatttggttgataacttttgtgacaaccataatttataaagaaaaaat-atgtatttgcacggaaactaaaacaatagaga 47215718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 49241427 - 49241491
Alignment:
Q  449 actttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaataga 514  Q
    ||||| ||||||||||||||||||||| ||||| | | |||||||||||||||  ||| |||||||    
T  49241427 acttttgagacaatcataatttacaaaagaaaagt-aggtatttgcacgaaaaccaatgcaataga 49241491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 5e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 10719929 - 10719742
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca--cacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    |||||||||| || |||||| |  |||||||||||||||||||||||||||  ||||||||||||||        |||||||||||| ||||||||||||    
T  10719929 aagagaaattttattatggtcacatgaccaaataaaaagtgtttggtcacaaacacataaagaaatattttttttaatagtaaagagaaaattgataaaa 10719830  T
Q  218 gaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
     ||  ||||||||||||||||||||||| |||||||||||||||    |||||||||||| |||||||||||||||||| | ||||||||||    
T  10719829 aaaaatgattgaatattttaaggaccatttttttatgtgtgtgt----ccaaacactattaatttggtcttatgaccatggaagaatacctc 10719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 2976378 - 2976555
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa- 220  Q
    |||||||||||||||||| |  |||| |||||||  ||||||||||||||||||||| || |         |||| |||||| ||||||||||||| ||     
T  2976378 gagaaattctaatatggtcacatgactaaataaa--gtgtttggtcacacacataaataatt-ttttttttaatattaaagaagaaattgataaaaaaaa 2976474  T
Q  221 tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| | ||||||||||    
T  2976475 tgattgaatattttaaggaccatctttttatgtgtgt------ccaaacactattgatttggtcttatgaccatggaagaatacctc 2976555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 120 - 308
Target Start/End: Original strand, 20524529 - 20524716
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    |||||||||||||||||| | |  ||| |||||||||||||||||||||||||||  ||||||||||        |||| ||||||||||||||||||||    
T  20524529 aagagaaattctaatatgatcacatgatcaaataaaaagtgtttggtcacacacacataaagaaatattttttttaataataaagaggaaattgataaaa 20524628  T
Q  218 gaa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
     || ||||||||||||||||  | |||||||| ||||||||||    ||||||| ||||||||| || || ||| ||| | |||||||||||    
T  20524629 aaaatgattgaatattttaaacatcatcttttgatgtgtgtgt----ccaaacagtattgatttagttttgtgatcatggaagaatacctca 20524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 8026574 - 8026463
Alignment:
Q  198 taaagaggaaattgata----aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacca 293  Q
    |||||||||||||||||    ||| |||||||||||||||||| |||||||||||||||||| ||   | ||||||| ||||||||||||||| |||| |    
T  8026574 taaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatg--cgtccaaacagtattgatttggtcttgtgacta 8026477  T
Q  294 taggagaatacctc 307  Q
    ||| ||||||||||    
T  8026476 tagaagaatacctc 8026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 33758901 - 33758790
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| |||| ||||||||||||||| | ||||||||||| ||| ||||  ||||||||||||||||||    ||||||| |||||||||| |||| ||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgt----ccaaacagtattgatttgatcttgtgac 33758806  T
Q  292 cataggagaatacctc 307  Q
    ||| | ||||||||||    
T  33758805 catggaagaatacctc 33758790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 9226475 - 9226383
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| || |||| ||||||||||| | |||||| |||||||||||| ||||||  ||||||||||||| |||| || ||||||||||    
T  9226475 tatttgaacaaccaatttggttgacaacttttgtgacaattataatttacaaa-gaaaaagtaagtatttgcacggaaatcaaaacaatagaga 9226383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 34849600 - 34849437
Alignment:
Q  144 tgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnn-aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggac 240  Q
    |||||||| ||||||||||||||||||||| |||| || ||         |||| ||| ||| |||||||||||| ||  |||||||||||||| ||||     
T  34849600 tgaccaaagaaaaagtgtttggtcacacacgtaaaaaagtatttttttttaataataaggagaaaattgataaaaaaagatgattgaatattttgaggag 34849501  T
Q  241 catctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
     |||||||||| |||||||    | ||||| ||||||||| ||||||||||||||  | |||||||||    
T  34849500 aatctttttatatgtgtgt----cgaaacattattgatttcgtcttatgaccataaaaaaatacctca 34849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 843 - 909
Target Start/End: Original strand, 973127 - 973193
Alignment:
Q  843 ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 909  Q
    ||||||||||  | ||||||| ||||||||||||||||||||| || |||||||| || ||||||||    
T  973127 ttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctc 973193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 34270501 - 34270425
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||| | ||||||| ||| ||||||| ||||||||||||||||||| | | |||||||||||||||    
T  34270501 tatttgaacaaccatttgg-ttgacaaattttgagacaaccataatttacaaaggaaaagt-aggtatttgcacgaaaa 34270425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  199 aaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtc 284  Q
    ||||| |||||||||||||   ||||||||||||||| ||||  ||||||||||||||||||    ||||||| |||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 30319906 - 30319817
Alignment:
Q  202 gaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacca 293  Q
    |||||||||||||||| | ||||||||||||||||| ||  || |||||||||| | ||||  ||||||| ||||||||||||||| ||||||    
T  30319906 gaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtat--ccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 283
Target Start/End: Original strand, 37872128 - 37872291
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 218  Q
    ||||||||||||||||| | |   ||||||| ||||||| ||||||||||||||  |||| |||||        |||| ||| ||||||||||||||||     
T  37872128 agagaaattctaatatgatcagaggaccaaagaaaaagtatttggtcacacacacataaaaaaatatattttt-aataataaggaggaaattgataaaaa 37872226  T
Q  219 aa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggt 283  Q
    ||  |||||||||||||| | ||  |||||||||||||||||  || ||||| | ||||||||||||    
T  37872227 aagatgattgaatattttgatgagaatctttttatgtgtgtg--tgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 189600 - 189657
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||||| |||| ||||    
T  189600 tatttgaacaatcatttgg-ttgacaacttttgggacaatcataatttataaagaaaaa 189657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 36442160 - 36442077
Alignment:
Q  223 attgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaa 310  Q
    |||||||||||||| ||||||||||||    | || |||| |||| |||||||||||||||||| ||| ||| | ||||| |||||||    
T  36442160 attgaatattttaaagaccatcttttt----gcgtttatgtccaatcactattgatttggtcttgtgagcatggaagaatccctcaaa 36442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 43441912 - 43441836
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||| | |||||||||||  |||||| |||||||||||||| ||||||   |||||||||||||||    
T  43441912 tatttgaacaaccatttgg-ttgacaacttttaagacaaccataatttacaaagaaaaaat-tggtatttgcacgaaaa 43441836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 906
Target Start/End: Complemental strand, 7113675 - 7113610
Alignment:
Q  841 aattatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcat 906  Q
    ||||||||||||| | |||| ||||||||| ||||||||||| ||||| |||| ||| || |||||    
T  7113675 aattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcat 7113610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 8675330 - 8675421
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||| ||||||    |||||||||||||||| ||  |||||||||    
T  8675330 tatttgaacaaccatttgg-ttgacaacttttgggacaaccataatttacaaa-gaaaaagttggtatttgcacgaaaatcaaagcaatagaga 8675421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 15008447 - 15008538
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||| |||| | ||||||||||  | |||||| |||||||||||| ||||| || | ||||||||||||||  || ||||||||||    
T  15008447 tatttgaacaattatttgg-ttgacaacttatgtgacaataataatttacaaaagaaaagtaga-tatttgcacgaaaaccaaaacaatagaga 15008538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 20654461 - 20654502
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgttt 163  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  20654461 gagaaattctaatatggtcacatgaccaaataaaaagtgttt 20654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 34888705 - 34888797
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||||| |||  ||||||||||| | || |||||||||||| ||| ||| ||| | ||||||| ||| |||| || ||||||||||    
T  34888705 tatttgaacaatcaatttagttgacaacttttgtgaaaatcataatttataaa-gaataattatgtatttgtacggaaatcaaaacaatagaga 34888797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 5e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 30706075 - 30706250
Alignment:
Q  119 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 218  Q
    ||||||||||| ||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||     
T  30706075 taagagaaattttaatatggtcacatgatcaaataaaaagtgtttggtcacacacacaaagaaatattttttttaatagtaaagaggaaattgataaaaa 30706174  T
Q  219 aa------tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccat 294  Q
    ||      |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||    
T  30706175 aaaaaaaatgattgaatattttaaggaccatctttttatgtgtgt------ccaaacactattgatttggtcttgtgaccat 30706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 122 - 307
Target Start/End: Complemental strand, 3870208 - 3870020
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnn--aatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||| |   ||||||| ||||||||||||||||||||||||||||| ||          |||| ||| |||||||||||||||| |    
T  3870208 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacataaagaagtattttttttttaataataaggaggaaattgataaaaaa 3870109  T
Q  220 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
     ||||||||||||||| ||||  |||||||||||| ||||| || | ||||| ||||||||||||||| ||||||| | ||||||||||    
T  3870108 gatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgaccatggaagaatacctc 3870020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 11028887 - 11028775
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatga 290  Q
    |||| ||| |||||||||||||||| ||  |||||||||||||||||||  ||||||||||||||||||    ||||||| ||||||||||||||| |||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtcttttga 11028792  T
Q  291 ccataggagaatacctc 307  Q
    | || | ||||||||||    
T  11028791 cgatggaagaatacctc 11028775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 6512079 - 6512196
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaa----tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttat 288  Q
    |||| |||||||||||||||||||| ||    |||||||||||||||  |  ||||||||||||||||||| |  ||||||||||||||||||||||| |    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttcatctttttatgtgtgtgtgt--ccaaacactattgatttggtcttgt 6512176  T
Q  289 gaccataggagaatacctca 308  Q
    |||||| | | |||||||||    
T  6512177 gaccatggaataatacctca 6512196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 4848117 - 4848248
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaat 221  Q
    |||||||||||||||| | |  ||| ||||||||||||| |||||| |||||||||| |||||        |||| |||| ||||||| ||||||| |||    
T  4848117 gagaaattctaatatgatcacatgatcaaataaaaagtggttggtcccacacataaaaaaatatttttt--aataataaaaaggaaatggataaaaaaat 4848214  T
Q  222 gattgaatattttaaggaccatctttttatgtgt 255  Q
    ||||||||||||||| || |||||||| ||||||    
T  4848215 gattgaatattttaatgatcatcttttcatgtgt 4848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 308
Target Start/End: Complemental strand, 37721629 - 37721444
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||| | | ||| ||| ||||||||||||||||||||||  ||||||| ||        |||| ||| |||||||||||||||| |    
T  37721629 gagaaattctaatatggtcacgagactaaagaaaaagtgtttggtcacacacacataaagaattattttttt-aataataaggaggaaattgataaaaaa 37721531  T
Q  220 a--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
    |  |||||||||||||| | ||  ||||||||||| | ||||    ||||| | ||||||||||||||| ||||||| | |||||||||||    
T  37721530 aaatgattgaatattttgaagagaatctttttatgcgcgtgt----ccaaatattattgatttggtcttgtgaccatggaagaatacctca 37721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 307
Target Start/End: Complemental strand, 38879697 - 38879513
Alignment:
Q  122 gagaaattctaatatggtta--tgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||| |  | |||||||| ||||| |||||||||| |||||||||||| ||        |||| | | ||| |||||||||||| |    
T  38879697 gagaaattctaatatggtcacatatgaccaaagaaaaaatgtttggtcatacacataaagaagtattttttt-aataatgaggagaaaattgataaaaaa 38879599  T
Q  220 a--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
    |  ||||| |||||||| ||||  ||||||||||||||||||    ||||||| |||| |||||||||| |||| || | ||||||||||    
T  38879598 agatgatttaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattaatttggtcttgtgactatggaagaatacctc 38879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 519
Target Start/End: Original strand, 22525893 - 22525987
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagagataa 519  Q
    ||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||| ||||||  | | |||||||||||||| ||  ||||||||||||    
T  22525893 tatttgaacaaccattt-gattgataacttttgagacaaccataatttacaaa-gaaaaagtaggcatttgcacgaaaatcaaagcaatagagataa 22525987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  207 aattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaata 303  Q
    ||||||||||| | ||||||||||||||| ||||  |||||||||||||||||  ||  |||||| |||||||||||||||  |||||| | ||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtg--tgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 34119550 - 34119640
Alignment:
Q  424 atttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||| ||||| | ||||||||||  |||||| |||||||||||||| ||||||  |||||||  ||||||||| || ||||||||||    
T  34119550 atttgaacaaccatttgg-ttgacaacttatgagacactcataatttacaaa-gaaaaagtaagtattcacacgaaaatcaaaacaatagaga 34119640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 9377630 - 9377554
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||| | ||||||||||  |||||| ||||||||||||||| |||| || | ||||||||||||||    
T  9377630 tatttgaacaaccatttag-ttgacaacttatgagacagtcataatttacaaagaaaaagtaga-tatttgcacgaaaa 9377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 14233615 - 14233692
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||||| ||||||||||   |||||| |||||||||||||| |||| | || ||||||||| ||||    
T  14233615 tatttgaacaaccattttg-ttgacaacttacaagacaaccataatttacaaagaaaaagttaaatatttgcacaaaaa 14233692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 29685491 - 29685582
Alignment:
Q  214 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
    |||| ||| |||||||||||| ||||  || |||||||||||||||  ||||||||||| ||  ||||||| | ||||||| | ||||||||||    
T  29685491 aaaaaaattattgaatattttgaggagaatttttttatgtgtgtgt--gaccaaacactttttctttggtcatgtgaccatggaagaatacctc 29685582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 519
Target Start/End: Complemental strand, 16677847 - 16677750
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaat---cataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagagataa 519  Q
    |||||||||||||| |||| ||||||||||| || |||||   ||||||||| |||| |||||| || ||||||||||||||  ||  ||||||||||||    
T  16677847 tatttgaacaatca-tttggttgacaacttttgaaacaattaccataatttataaagaaaaaattaa-tatttgcacgaaaaccaaagcaatagagataa 16677750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 120 - 292
Target Start/End: Complemental strand, 46023311 - 46023139
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacac--ataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    |||||||||||||||||||| |  |||||||||||||| |||||||||| ||||  |||||||||||        ||||||||| || ||||||||||||    
T  46023311 aagagaaattctaatatggtcagatgaccaaataaaaaatgtttggtcatacacgcataaagaaatatttattttaatagtaaaaagaaaattgataaaa 46023212  T
Q  218 gaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 292  Q
     ||||||||||||||||||  ||||||||||||||||||||  || ||||||| ||||||||||||||| |||||    
T  46023211 aaatgattgaatattttaaaaaccatctttttatgtgtgtg--tgtccaaacaatattgatttggtcttgtgacc 46023139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 30783412 - 30783589
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||||||||  ||||||||||        ||||  ||||||||||||||||||| |    
T  30783412 gagaaattctaaaatggtcacatgaccaaataaaaagtgtttggtcacacacacataaagaaatattttttt-aataagaaagaggaaattgataaaaaa 30783510  T
Q  220 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 304  Q
    || ||| ||||||||||| |||||||||||||||||||      |||||||||||| |||| ||||| ||||||||| |||||||    
T  30783511 ataattaaatattttaagaaccatctttttatgtgtgt------ccaaacactattaatttagtcttctgaccatagaagaatac 30783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 34998710 - 34998524
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 218  Q
    ||||||||||||||||||| |  ||| |||| ||||||| ||||||||||||||  ||||||||||        |||| ||| ||| ||||||||||||     
T  34998710 agagaaattctaatatggtcacatgatcaaagaaaaagtatttggtcacacacacataaagaaatattttttt-aataataaggagaaaattgataaaaa 34998612  T
Q  219 -aatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
     |||||||||||||||| ||||  |||||||||| ||||||| |  ||||||| ||||||||||||||| ||||||| | ||||||||||    
T  34998611 taatgattgaatattttgaggagaatctttttatatgtgtgtgt--ccaaacattattgatttggtcttgtgaccatggaagaatacctc 34998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 122 - 308
Target Start/End: Complemental strand, 8541609 - 8541426
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgat--aaaaga 219  Q
    |||||||| ||||||||||||  || |||| ||| ||||||||||||||||||||||||| ||        |||| ||| ||||||||||||  |||| |    
T  8541609 gagaaattttaatatggttataggatcaaagaaatagtgtttggtcacacacataaagaagta-tttttttaataataaggaggaaattgataaaaaata 8541511  T
Q  220 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
    ||||||||||||||| ||||  ||||||||| ||||||||     |||||| ||||||||||||||| ||||||||  |||||| ||||    
T  8541510 atgattgaatattttgaggagaatctttttacgtgtgtgt----tcaaacattattgatttggtcttgtgaccataaaagaatatctca 8541426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 39187980 - 39188068
Alignment:
Q  214 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 306  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||| ||||||| | |||||||||    
T  39187980 aaaaaaatgattgaatattttaaggaccatctttttatgcgtgtgt----ccaaatactattgatttggtcttctgaccatggaagaatacct 39188068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 45627340 - 45627527
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnn-aatagtaaagaggaaattgataaaag 218  Q
    |||||||||||| ||||| |  |||||||||||||| ||||||||||||||||  ||||||||||         |||| || | |||||||||||||||     
T  45627340 gagaaattctaaaatggtcacatgaccaaataaaaactgtttggtcacacacacataaagaaatatttttttttaataatataaaggaaattgataaaaa 45627439  T
Q  219 aa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 306  Q
    || ||||| |||||||||||||| || ||||| | ||||||| || | ||||||||||||||||||| | ||||||| | |||||||||    
T  45627440 aaatgattaaatattttaaggacaattttttt-tatgtgtgtgtgtcaaaacactattgatttggtcctgtgaccatggaagaatacct 45627527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 32677125 - 32677070
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata 176  Q
    ||||||||||||||||||| |  ||| |||||||||| ||||||||||||||||||    
T  32677125 agagaaattctaatatggtcacatgatcaaataaaaaatgtttggtcacacacata 32677070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 843 - 909
Target Start/End: Complemental strand, 758001 - 757935
Alignment:
Q  843 ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 909  Q
    ||||||||||| | |||||||| |||||||| || ||||||||||| |||||||| || ||||||||    
T  758001 ttatcattttcatctcaaaaatcttaaatttatttatctccttcattcaacatgtgatcttcatctc 757935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 16980468 - 16980411
Alignment:
Q  425 tttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaat 483  Q
    ||||||||| ||||| | ||||||||||| |||||||||||||||||||||| ||||||    
T  16980468 tttgaacaaccatttag-ttgacaacttttgagacaatcataatttacaaagaaaaaat 16980411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 15878700 - 15878796
Alignment:
Q  144 tgaccaaataaaaagtgtttggtcacacac--ataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaatgattgaatattttaagga 239  Q
    ||||||||||||||||||||||||||||||  || ||||||||        |||| ||||||  |||||||||||| ||| |||||||||||||||||    
T  15878700 tgaccaaataaaaagtgtttggtcacacacaaatcaagaaata-tttttttaataataaagactaaattgataaaacaataattgaatattttaagga 15878796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 46532677 - 46532585
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| || |||| ||||||||||| | ||||| ||||||||| ||| ||||||| | |||||| ||||||||  || ||||||||||    
T  46532677 tatttgaacaaccaatttggttgacaacttttgtgacaaccataatttataaa-gaaaaattaggtatttacacgaaaaccaaaacaatagaga 46532585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 908
Target Start/End: Complemental strand, 29152532 - 29152482
Alignment:
Q  857 tcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatct 908  Q
    ||||||| ||||||||| ||||||| |||||| |||||||||||||||||||    
T  29152532 tcaaaaacattaaattt-ttcatctacttcattcaacatgtaatattcatct 29152482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 10545100 - 10544987
Alignment:
Q  193 aatagtaaagaggaaattgataaa---agaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatg 289  Q
    |||| |||||||||||||||||||   | ||||||||||||||||||  |  |||||||||||||||| |    ||||| |||||||||| |||||| ||    
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtct----ccaaatactattgattcggtcttgtg 10545005  T
Q  290 accataggagaatacctc 307  Q
    | | | | ||||||||||    
T  10545004 atcgtggaagaatacctc 10544987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 42555738 - 42555681
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    ||||||||||| ||||| | ||||||||||| ||||||| ||||||||| |||||||||    
T  42555738 tatttgaacaaccatttgg-ttgacaacttttgagacaaccataatttataaaggaaaa 42555681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 43573440 - 43573516
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    |||||||||||||| |||| ||||||| ||| ||||||| ||||||||| |||| ||||||   |||||||||||||||    
T  43573440 tatttgaacaatca-tttggttgacaatttttgagacaaccataatttataaagaaaaaat-tggtatttgcacgaaaa 43573516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 44184456 - 44184532
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||| | ||||||||||| |  |||| |||||||||||||| |||||| | |||||||||||||||    
T  44184456 tatttgaacaaccatttgg-ttgacaacttttggaacaaccataatttacaaagaaaaaat-aggtatttgcacgaaaa 44184532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 4713748 - 4713656
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||| || || |||| ||||||||||  | ||||| ||||||||||||| ||||||||| ||||||||| | |||  || ||||||||||    
T  4713748 tatttgaataaccaatttggttgacaacttatgtgacaaccataatttacaaa-gaaaaataaggtatttgcatggaaaccaacacaatagaga 4713656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 33180607 - 33180698
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||  |||||||| |||||||| |||| | |||| | |||||||||||||||  || ||||||||||    
T  33180607 tatttgaacaaccatttgg-ttgacaacttatgagacaatgataatttataaag-agaaattatgtatttgcacgaaaaccaaaacaatagaga 33180698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 35452469 - 35452561
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||||| | || ||||||||||  | ||||| ||||||||| ||| |||||| || ||||||||||| |||| ||  |||||||||    
T  35452469 tatttgaacaatcaatctggttgacaacttgtgtgacaaccataatttataaa-gaaaaagaaggtatttgcacggaaatcaaagcaatagaga 35452561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 44304098 - 44304006
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||| || ||||| |||||||||||||||    |||||  |||||||||| || |||||| ||||||||| |||||||| || ||||||||||    
T  44304098 tatttcaagaatcaatttgattgacaacttatatgacaactataatttacagagaaaaaat-aagtatttgtacgaaaatcaaaacaatagaga 44304006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 47169429 - 47169243
Alignment:
Q  124 gaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa--- 220  Q
    |||||| |||||||||  | |||||||||||||||||||| ||||||||||||||||||||        |||| |||||||||||||||||||| ||       
T  47169429 gaaattttaatatggtcgtatgaccaaataaaaagtgtttagtcacacacataaagaaataatttttt-aataataaagaggaaattgataaaaaaaaaa 47169331  T
Q  221 ----tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 306  Q
        ||||||||||||||| ||||| ||||||||||||||||| |  |||||||||||||||||||||||||||| |||  |||||||||    
T  47169330 aaaatgattgaatattttatggaccctctttttatgtgtgtgtgt--ccaaacactattgatttggtcttatgactataaaagaatacct 47169243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 1994850 - 1994957
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| |||||||| ||||||||||| | ||||||||||||||| ||||  |||||||| ||||| |||    ||||||| ||||||||||||||| ||||    
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgt----ccaaacattattgatttggtcttgtgac 1994945  T
Q  292 cataggagaata 303  Q
    ||||| ||||||    
T  1994946 catagtagaata 1994957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 39170903 - 39171021
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||||| |   || |||||||| | ||||||||||||||||||||||||||        |||| |||| || |||||||||||| |    
T  39170903 aagagaaattctaatatggtcacaagatcaaataaataatgtttggtcacacacataaagaaata-tttatttaataataaaaagaaaattgataaaata 39171001  T
Q  220 atgattgaatattttaagga 239  Q
    |||||||| |||||||||||    
T  39171002 atgattgagtattttaagga 39171021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 22220318 - 22220205
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatga 290  Q
    |||| ||| |||||||||||||||| ||  |||||||||||||| || |  |||||||||||||||||||    |||||| |||||||||| |||| |||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgta----caaacattattgatttgatcttttga 22220223  T
Q  291 ccataggagaatacctca 308  Q
    |||| | |||||||||||    
T  22220222 ccatggaagaatacctca 22220205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 308
Target Start/End: Original strand, 45805455 - 45805645
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcac--acacataaagaaatannnnnnnnaatagtaaagaggaaattgata----- 214  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||  ||||||||| ||||          ||| |||||||||||||||||         
T  45805455 gagaaattctaatatggtcacatgaccaaataaaaagtgtttggtcacatacacataaacaaat-gttttttttataataaagaggaaattgataaataa 45805553  T
Q  215 --aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
      ||| ||| ||| |||||||||| ||||||||||||||||||||||     ||||||||||||||||| |||| | | ||| | |||||||||||    
T  45805554 ataaaaaataattaaatattttaaagaccatctttttatgtgtgtgt----gcaaacactattgatttgatcttgtaatcatggaagaatacctca 45805645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 518
Target Start/End: Original strand, 46139699 - 46139794
Alignment:
Q  421 tgtatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagagata 518  Q
    ||||||||||||||||||| | |||||||||||  ||| ||||||||||||||||   || |||| |||||||||||||||| || ||||||||||||    
T  46139699 tgtatttgaacaatcatttgg-ttgacaacttttaagataatcataatttacaaaaagaacataa-gtatttgcacgaaaatcaaaacaatagagata 46139794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 25199125 - 25199064
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaa 181  Q
    |||||||||||||||||||| |   ||||||| |||||||||||||||||||| ||||||||    
T  25199125 aagagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacatataaagaa 25199064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 36412298 - 36412206
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||  | ||||| |||||||||||||| || ||| | |||||||||||||||| ||  |||||||||    
T  36412298 tatttgaacaaccatttggtttgacaacttatgggacaaccataatttacaaagaaagaat-atgtatttgcacgaaaatcaaagcaatagaga 36412206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 2008508 - 2008395
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||| ||||  |||||||||| ||||||  || ||||| | ||||||||||||||| |||     
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtg--tgtccaaatattattgatttggtcttgtgat 2008411  T
Q  292 cataggagaatacctc 307  Q
    ||| | ||||| ||||    
T  2008410 catggaagaatgcctc 2008395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 39056875 - 39056964
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtctt 286  Q
    |||| ||| ||| |||| |||||||  ||||||||||||||| ||||  ||||||||||||||||||    ||||||| ||| |||||||||||    
T  39056875 aatattaaggagaaaatcgataaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgt----ccaaacattatagatttggtctt 39056964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 21196298 - 21196221
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaat 502  Q
    ||||||||||| ||||| ||||||||| ||  | || ||||||||||||||||| |||||| | ||||||||||||||||    
T  21196298 tatttgaacaaccattt-gattgacaatttatgggataatcataatttacaaagaaaaaat-atgtatttgcacgaaaat 21196221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 28297782 - 28297723
Alignment:
Q  193 aatagtaaagaggaaattgataaaag-aatgattgaatattttaaggaccatctttttat 251  Q
    |||| ||||||||||||||||||||| |||||| |||||| |||||||  ||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttat 28297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 39697133 - 39697195
Alignment:
Q  438 tttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    |||||||||||||||| | ||||| |||||||||||||| ||||||  | ||||||||||||||    
T  39697133 tttgattgacaacttttgggacaaccataatttacaaagaaaaaattga-tatttgcacgaaaa 39697195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 514
Target Start/End: Original strand, 46852029 - 46852118
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaataga 514  Q
    ||||||||||| ||||| | ||||||||||| | |||||||||||||||||||| |||| |  | ||||||||||||||  || ||||||||    
T  46852029 tatttgaacaaccatttgg-ttgacaacttttgggacaatcataatttacaaagaaaaagttga-tatttgcacgaaaaccaaaacaataga 46852118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 3953372 - 3953429
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||||||| |||| ||||    
T  3953372 tatttgaacaatcatttgg-ttgacaatttttgagacaatcataatttataaagaaaaa 3953429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 6999344 - 6999253
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||  | ||||| |||||||||||| | |||||| | |||||||||||||||| ||  |||||||||    
T  6999344 tatttgaacaaccatttgg-ttgacaacttatgggacaaccataatttacaatgaaaaaat-atgtatttgcacgaaaatcaaagcaatagaga 6999253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 37927101 - 37927162
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaata 484  Q
    ||||||||||| || |||||||||||||||  | ||||| ||||||||| |||| |||||||    
T  37927101 tatttgaacaaccaatttgattgacaacttgtgtgacaaccataatttataaagaaaaaata 37927162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 51465811 - 51465902
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||| ||||||    |||||||||||||||| ||  |||||||||    
T  51465811 tatttgaacaaccatttgg-ttgacaacttttgggacaaccataatttacaaa-gaaaaagttggtatttgcacgaaaatcaaagcaatagaga 51465902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 17056793 - 17056614
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtca--cacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||| ||||| |   |||||||||||| |||||||||||  ||||||||||||||||        |||| |||||||||||||||||||| |    
T  17056793 gagaaattctaaaatggtcacacgaccaaataaaa-gtgtttggtcatacacacataaagaaatattttttt-aataataaagaggaaattgataaaaaa 17056696  T
Q  220 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 304  Q
    |||||| |||||||||||||| || ||||||| |||||||||   |||||||||||||||||||||| ||||||| | |||||||    
T  17056695 atgattaaatattttaaggacaat-tttttatatgtgtgtat--tcaaacactattgatttggtcttgtgaccatggaagaatac 17056614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 124 - 308
Target Start/End: Original strand, 20679770 - 20679956
Alignment:
Q  124 gaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca--cataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa- 220  Q
    |||||||||||||||| |  |||| |||||||||||||||  |||||||  ||||||||||||        |||| |||||||||||||||||||| ||     
T  20679770 gaaattctaatatggtcagatgacgaaataaaaagtgtttaatcacacatacataaagaaatattttttttaataataaagaggaaattgataaaaaaaa 20679869  T
Q  221 tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
    | |||||||||||||| |||||| ||||| | ||||||| || |||||||||||||||||| ||||  ||||||   |||||||||||    
T  20679870 taattgaatattttaaagaccattttttt-tatgtgtgtgtgtccaaacactattgatttgatcttgagaccatgaaagaatacctca 20679956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 47833603 - 47833503
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 292  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||||   |||||||||||  ||||||| |||| |||||| |||||||||||  ||||    
T  47833603 aataataaagaggaaattgataaaataatgattgaatattttgaggatggtctttttatgt--gtgtatgtccaaccactatagatttggtcttgcgacc 47833506  T
Q  293 ata 295  Q
    |||    
T  47833505 ata 47833503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 39503431 - 39503616
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 218  Q
    ||||||||| ||||||||| |  |||  |||||||||||||||| |||||||||  ||||||||||        |||| ||||||||||||||||||||     
T  39503431 agagaaattttaatatggtcacatgattaaataaaaagtgtttgatcacacacacataaagaaatattttttt-aataataaagaggaaattgataaaaa 39503529  T
Q  219 aatga---ttgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 304  Q
    ||  |   || |||||||||| || ||||||||||||||| ||| |   |||||||||||||||| ||||| ||||||||| |||||||    
T  39503530 aaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgtt--caaacactattgatttagtcttgtgaccatagaagaatac 39503616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 303
Target Start/End: Original strand, 46550629 - 46550813
Alignment:
Q  119 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaata-nnnnnnnnaatagtaaagaggaaattgat-a 214  Q
    ||||||||||||||||||||| |   ||||||| ||||||||||||||  ||||||||||||||| ||         |||| ||||||| |||||||| |    
T  46550629 taagagaaattctaatatggtcacaagaccaaagaaaaagtgtttggtcacacacacataaagaagtatttttttttaataataaagagaaaattgataa 46550728  T
Q  215 aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaata 303  Q
    |||  ||||||||||||||  ||||  |||||||||||| ||||| |    ||||| ||||||||||||||| ||||||| | ||||||    
T  46550729 aaatgatgattgaatatttagaggagaatctttttatgtatgtgttt----aaacattattgatttggtcttgtgaccatggaagaata 46550813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 47541737 - 47541876
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||| | | || |||| ||||||||||||||||||||||  |||| |||||        |||| |||  ||||||||||||||| |    
T  47541737 gagaaattctaatatggtcacgagatcaaagaaaaagtgtttggtcacacacacataaaaaaatattttttt-aataataagaaggaaattgataaaaaa 47541835  T
Q  220 -atgattgaatattttaaggaccatctttttatgtgtgtgt 259  Q
     ||||||||||||||| ||||  ||||||||||||||||||    
T  47541836 gatgattgaatattttgaggaaaatctttttatgtgtgtgt 47541876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 36364868 - 36364954
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtctt 286  Q
    |||||||||||| ||||||||||||  || || |||||||||||||||||| ||||||| |||||||    ||||||| |||||||||||||||    
T  36364868 aatagtaaagagaaaattgataaaa--ataat-gaatattttaaggaccatatttttatatgtgtgt----ccaaacattattgatttggtctt 36364954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 39344877 - 39344953
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaa 501  Q
    ||||||||||| ||||| | |||| |||||| |||||||||||||||||||||| ||||||   |||||||||||||||    
T  39344877 tatttgaacaaccatttgg-ttgataacttttgagacaatcataatttacaaagaaaaaat-tggtatttgcacgaaaa 39344953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 33860821 - 33860729
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| || |||||||||||||||  | |||||  |||||||||||| ||||||  ||||||||||||| |||  || ||||||||||    
T  33860821 tatttgaacaaccaatttgattgacaacttacgtgacaacgataatttacaaa-gaaaaagtaagtatttgcacggaaaccaaaacaatagaga 33860729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 36364605 - 36364657
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 174  Q
    |||||||| ||||||||| | |||| |||||||||| ||||||||||||||||    
T  36364605 gagaaattttaatatggtcacgtgatcaaataaaaaatgtttggtcacacaca 36364657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 15827051 - 15827104
Alignment:
Q  121 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 174  Q
    ||||||||||||||||||||| | ||| ||| ||| |||||||||||| |||||    
T  15827051 agagaaattctaatatggttacgggactaaagaaatagtgtttggtcatacaca 15827104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 18882872 - 18882963
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||| |  | ||||||||||||||||| |||||| | ||||||| |||||||| ||  |||||||||    
T  18882872 tatttgaacaaccatttgg-ttgacaacttttggaaaaatcataatttacaaagaaaaaat-aggtatttgtacgaaaatcaaagcaatagaga 18882963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 438 - 516
Target Start/End: Complemental strand, 43397733 - 43397655
Alignment:
Q  438 tttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||    
T  43397733 tttggttgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacaaaaatcaatgcattagaga 43397655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 122 - 312
Target Start/End: Complemental strand, 36132854 - 36132667
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaatannnnnnnnaatagtaaagaggaaattgat-aaaag 218  Q
    |||||||||||||||||| || || ||||||||||||||||||||   |||||||||||||||||        |||| | ||||||||||| || ||||     
T  36132854 gagaaattctaatatggtcatatggccaaataaaaagtgtttggttatacacacataaagaaata-tttttttaataat-aagaggaaattaataaaaaa 36132757  T
Q  219 aatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaaaa 312  Q
    ||||||| ||||||||||  ||||||||||||||||||| |    ||||| |||||| |||| ||||| |||| |||| |||||||||| ||||    
T  36132756 aatgattaaatattttaaaaaccatctttttatgtgtgtat----ccaaatactattaatttagtcttgtgactatagaagaatacctctaaaa 36132667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 122 - 307
Target Start/End: Complemental strand, 30208379 - 30208195
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||||||||||| |   ||||||| ||||||||||||||||||||||  ||||||| |         |||| ||| |||||||||||||||| |    
T  30208379 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacacataaagaagt-gtttttttaataataaggaggaaattgataaaaaa 30208281  T
Q  220 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 307  Q
     |||||||||||||| | |||  |||||||||||| | ||| |  ||||||| ||||||||||||||||||||||| | ||||||||||    
T  30208280 gatgattgaatatttga-ggagaatctttttatgtatatgtgt--ccaaacattattgatttggtcttatgaccatggaagaatacctc 30208195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 122 - 308
Target Start/End: Original strand, 40719821 - 40720010
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca----cacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 217  Q
    ||||||||||||||||||    |||||||| ||||||||||||||||||    ||||||||||| ||        |||| ||| ||||||||||||||||    
T  40719821 gagaaattctaatatggtcgcatgaccaaagaaaaagtgtttggtcacatacacacataaagaagtatttttta-aataataaggaggaaattgataaaa 40719919  T
Q  218 gaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 308  Q
     ||  |||||||||||||| ||||  |||||||||||||||||  || ||||||| |||| ||||  |||| ||||||| | |||||||||||    
T  40719920 aaagatgattgaatattttgaggagaatctttttatgtgtgtg--tgtccaaacattattaatttaatcttttgaccatggaagaatacctca 40720010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 291
Target Start/End: Original strand, 31333091 - 31333258
Alignment:
Q  123 agaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga- 219  Q
    ||||||||||||||||| |  ||| |||| ||| ||||||||||||||||||  ||||||||||        |||| ||| ||| ||| |||||||| |     
T  31333091 agaaattctaatatggtcacatgatcaaagaaatagtgtttggtcacacacacataaagaaatattttttt-aataataaggagaaaactgataaaaaag 31333189  T
Q  220 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||||||||||||||||| |  |||||||||||||||||||  |||||||| | ||||||||||||| ||||    
T  31333190 atgattgaatattttaagtaaaatctttttatgtgtgtgta--accaaaca-ttttgatttggtcttgtgac 31333258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 820 - 897
Target Start/End: Original strand, 34695821 - 34695899
Alignment:
Q  820 cttcgtctttattcttgcaataa-ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgt 897  Q
    |||| ||||||||||| |||| | ||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||||    
T  34695821 cttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgt 34695899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 42056787 - 42056680
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||||| ||  |||||||||||| |||||    ||||||| ||||||||||||||| ||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgt----ccaaacattattgatttggtcttgtgac 42056692  T
Q  292 cataggagaata 303  Q
    ||| | ||||||    
T  42056691 catggaagaata 42056680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 1162045 - 1162183
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 219  Q
    |||||||||| ||||||| ||  ||| ||| ||||||||||||||  ||||||||||||||||||        |||| |||||||||||||||||| | |    
T  1162045 gagaaattcttatatggtcataggactaaagaaaaagtgtttggtcacacacacataaagaaata-tttttttaataataaagaggaaattgataagaaa 1162143  T
Q  220 atgattgaatattttaaggaccatctttttatgtgtgtgt 259  Q
       |||||||||||| ||||  ||| ||||||||||||||    
T  1162144 gacattgaatattttgaggagaatccttttatgtgtgtgt 1162183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 31597122 - 31597065
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    ||||||||||| ||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  31597122 tatttgaacaaccattt-gattgataacttttgagacaatcataatttacaaagaaaaa 31597065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 35179258 - 35179156
Alignment:
Q  203 aggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggaga 300  Q
    ||||||||||||||| ||  | |||||||||||| || |  |||||||||| |||||||    ||||||| |||||||||||||||||||||||   |||    
T  35179258 aggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgt----ccaaacattattgatttggtcttatgaccatgaaaga 35179163  T
Q  301 atacctc 307  Q
    |||||||    
T  35179162 atacctc 35179156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 29440419 - 29440511
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||||| |||||||||||| ||  | ||||| ||||||||| | | ||||||  ||||||||||||| |||| || ||||||||||    
T  29440419 tatttgaacaatcaatttgattgacaatttacgtgacaaccataatttataca-gaaaaagtaagtatttgcacggaaatcaaaacaatagaga 29440511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 910
Target Start/End: Complemental strand, 32166696 - 32166627
Alignment:
Q  841 aattatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctct 910  Q
    ||||||||||||| | |||| || || ||| |||||||||||||| || ||||||||||| |||||||||    
T  32166696 aattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctct 32166627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 9549110 - 9549156
Alignment:
Q  438 tttgattgacaactttagagacaatcataatttacaaaggaaaaata 484  Q
    |||| |||||||||||  |||||| ||||||||||||||||||||||    
T  9549110 tttggttgacaactttttagacaaccataatttacaaaggaaaaata 9549156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 16782307 - 16782365
Alignment:
Q  118 ttaagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata 176  Q
    ||||| |||||||||||||| | ||  ||||||||||| ||||||||| ||||||||||    
T  16782307 ttaagcgaaattctaatatgatcataagaccaaataaatagtgtttggacacacacata 16782365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 39402038 - 39402136
Alignment:
Q  205 gaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 302  Q
    ||||||||||||| ||  |||||||||||||| ||||  |||||||||  ||| ||||||  |||| | ||||||||||||||| ||||||| | |||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatcttttta--tgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaat 39402135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 6048653 - 6048710
Alignment:
Q  245 tttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 302  Q
    ||||||||||||||| ||||||||||||||| |||||   || ||||||||| |||||    
T  6048653 tttttatgtgtgtgtgtgaccaaacactattcatttgtgtttgtgaccatagaagaat 6048710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 20174859 - 20174767
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||| || ||||| |||||||||||||||    |||||  |||||||||| || |||||| ||||||||| |||||||| || ||||||||||    
T  20174859 tatttcaagaatcaatttgattgacaacttatatgacaactataatttacagagaaaaaat-aagtatttgtacgaaaatcaaaacaatagaga 20174767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 20219586 - 20219494
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||| || ||||| |||||||||||||||    |||||  |||||||||| || |||||| ||||||||| |||||||| || ||||||||||    
T  20219586 tatttcaagaatcaatttgattgacaacttatatgacaactataatttacagagaaaaaat-aagtatttgtacgaaaatcaaaacaatagaga 20219494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 30439403 - 30439494
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | |||| |||||  | ||||| |||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||    
T  30439403 tatttgaacaaccatttgg-ttgataacttatgtgacaaccataatttacaaagaaaaaat-gagtatttgcacgaaaatcaaagcaatagaga 30439494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 36424498 - 36424590
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    |||||||||||  | ||||||||| |||||| | ||||| ||||||||| |||| |||||| | ||||||||||| |||  || ||||||||||    
T  36424498 tatttgaacaactaatttgattgataacttttgtgacaaccataatttataaagaaaaaat-atgtatttgcacggaaaccaaaacaatagaga 36424590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 38708191 - 38708283
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| || |||||||||||| ||  | ||||| |||||||| ||||| ||||||| | |||||||||| |||| || ||||| ||||    
T  38708191 tatttgaacaaccaatttgattgacaatttatgtgacaaccataatttgcaaagaaaaaataga-tatttgcacggaaatcaaaacaatggaga 38708283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 57 - 170
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 292  Q
    |||| |||||| ||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||  || ||||||||||||||||||||||| ||| |    
T  57 aataataaagatgaaattgataaaaaaatgattgaatatttttaagactatctttttatgtatgtg--tgtccaaacactattgatttggtcttgtgatc 154  T
Q  293 ataggagaatacctca 308  Q
    || | |||||||||||    
T  155 atggaagaatacctca 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 31749539 - 31749448
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||| | ||||| |||||||||||| ||||||||||    
T  31749539 tatttgaacaatcattt-gattgacaacttaagagacaaccataatttacaaagaaaaaataga-tatttacacgaaaattaaaacaatagaga 31749448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 7080262 - 7080149
Alignment:
Q  193 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 291  Q
    |||| |||||| ||||||||||||| | || |||||||||||| | ||  |||||||||||||||||| |  ||||||| ||||||||||||| | ||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgt--ccaaacattattgatttggtcatgtgac 7080165  T
Q  292 cataggagaatacctc 307  Q
    ||||| ||||||||||    
T  7080164 catagaagaatacctc 7080149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 2141175 - 2141222
Alignment:
Q  125 aaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca 172  Q
    ||||||||||||||| || ||| |||| ||||||||||||||||||||    
T  2141175 aaattctaatatggtcatatgatcaaagaaaaagtgtttggtcacaca 2141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 994930 - 994876
Alignment:
Q  120 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 174  Q
    |||||||||||||| ||||| |   ||||||||||| ||||||||||||||||||    
T  994930 aagagaaattctaacatggtcacaagaccaaataaatagtgtttggtcacacaca 994876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 2688961 - 2689019
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    |||||||||||||| |||| ||||||||||| | ||||| ||||||||| |||| ||||    
T  2688961 tatttgaacaatcaatttggttgacaacttttgtgacaaccataatttataaagaaaaa 2689019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 35213458 - 35213515
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaa 481  Q
    ||||||||||| ||||| | ||||||||||| | |||||||||||||||||||| ||||    
T  35213458 tatttgaacaaccatttgg-ttgacaacttttgggacaatcataatttacaaagaaaaa 35213515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 994874 - 994915
Alignment:
Q  253 tgtgtgtatgaccaaacactattgatttggtcttatgaccat 294  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  994874 tgtgtgtgtgaccaaacactatttatttggtcttgtgaccat 994915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 1369534 - 1369443
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||| ||| ||||||| ||||||||||||| ||||||    |||||||||||||||| ||  |||||||||    
T  1369534 tatttgaacaaccatttgg-ttgacaatttttgagacaaccataatttacaaa-gaaaaagttggtatttgcacgaaaatcaaagcaatagaga 1369443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 13143279 - 13143370
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||| ||||||    |||||||||||||||| ||  |||||||||    
T  13143279 tatttgaacaaccatttgg-ttgacaacttttgggacaaccataatttacaaa-gaaaaagtttgtatttgcacgaaaatcaaagcaatagaga 13143370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 26832820 - 26832729
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| ||||| ||||||||||||  | ||||| |||||||||| || ||||||  | |||||||||||||||  || ||||||||||    
T  26832820 tatttgaacaaccattt-gattgacaacttatgtgacaaccataatttacgaa-gaaaaactatgtatttgcacgaaaaccaaaacaatagaga 26832729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 5379 - 5462
Alignment:
Q  193 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgat 278  Q
    |||| |||||| ||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||  || |||||||||||||||    
T  5379 aataataaagatgaaattgataaaaaaatgattgaatatttttaagactatctttttatgtatgtg--tgtccaaacactattgat 5462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 26017 - 25955
Alignment:
Q  122 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaata 184  Q
    |||||||||||||||||| |  |||||| |  |||||||||||| ||||||||||||||||||    
T  26017 gagaaattctaatatggtcacatgaccataggaaaagtgtttgggcacacacataaagaaata 25955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 11138 - 11047
Alignment:
Q  423 tatttgaacaatcattttgattgacaactttagagacaatcataatttacaaaggaaaaataaagtatttgcacgaaaattaatacaatagaga 516  Q
    ||||||||||| | ||||| ||||||||||  | ||||||||||||||||||| ||||||    |||||||||||||||| || ||||||||||    
T  11138 tatttgaacaacc-ttttggttgacaacttatgtgacaatcataatttacaaa-gaaaaagtgggtatttgcacgaaaatcaaaacaatagaga 11047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 17974 - 18030
Alignment:
Q  119 taagagaaattctaatatggttatgtgaccaaa-taaaaagtgtttggtcacacaca 174  Q
    ||||||||||||||||||||| | | |||||||  ||||||||||||||||||||||    
T  17974 taagagaaattctaatatggtcacgggaccaaagaaaaaagtgtttggtcacacaca 18030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 35464 - 35366
Alignment:
Q  205 gaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 302  Q
    ||||||||||||| ||  |||||||||||||| ||||  |||||||||  ||| ||||||  |||| | ||||||||||||||| ||||||| | |||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatcttttta--tgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaat 35367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University