View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_high_11 (Length: 387)
Name: NF2038_high_11
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 31604378 - 31604747
Alignment:
| Q |
1 |
tgtgaaaagtttcacaatcacattatttgacttgtgttgctcatatgatctaaaggcatttattatgtgatttgaacaagaggagtgcgacgattttgtc |
100 |
Q |
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| T |
31604378 |
tgtgaaaagtttcacaatcacattatttgacttgtgttgctcatatgatctaaaggcatttattatgtgatttgaactagaggagtgcgacgattttgtc |
31604477 |
T |
|
| Q |
101 |
ttgttgcttgttcgttgatgatctatgaaaagtggtgctgatctccctctaagttgaataagatgttggacatagaaacaaataggattttccaaagaag |
200 |
Q |
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| T |
31604478 |
ttgttgcttgttcgttgatgatctacgaaaagtggtgctgatcttcctctaagttgaataagatgtaggacatagaaacaaataggattttccaaagaag |
31604577 |
T |
|
| Q |
201 |
ggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaat |
300 |
Q |
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| T |
31604578 |
ggtttgacatttcaagaagattgataatggatggtgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaat |
31604677 |
T |
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| Q |
301 |
ggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgtggtt |
370 |
Q |
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| T |
31604678 |
ggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgtggtt |
31604747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 367
Target Start/End: Original strand, 31594160 - 31594492
Alignment:
| Q |
35 |
tgttgctcatatgatctaaaggcatttattatgtgatttgaacaagaggagtgcgacgattttgtcttgttgcttgttcgttgatgatctatgaaaagtg |
134 |
Q |
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| T |
31594160 |
tgttgctcatatgatctaaaggcgtttattatgcgtcttgaataagaagagtgtgacgacttagtcttcccatatattggttgatgatctatgaagagtg |
31594259 |
T |
|
| Q |
135 |
gtgctgatctccctctaagttgaataagatgttggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggttgg |
234 |
Q |
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||| ||||| ||| |||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||| ||| |
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| T |
31594260 |
gtgtcgatcttcctgcaagttgaataagatgtaggacatagaaacaaataggacttcgcagtgaagggtttgacatttcaagaagattgatcatggatgg |
31594359 |
T |
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| Q |
235 |
tgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctctta |
334 |
Q |
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| T |
31594360 |
tatgttttcttgatcgtgtacacatgccatgagacgtagctcaatatctgaagctgattgttcaatggttcttctcttatttaaggacaaatatctctta |
31594459 |
T |
|
| Q |
335 |
gatgggtcatataggaatttcaaaatgggtgtg |
367 |
Q |
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| T |
31594460 |
gatgggtcatataggaatttcacaatgggtgtg |
31594492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 31563242 - 31563610
Alignment:
| Q |
1 |
tgtgaaaagtttcacaatcacattatttgacttgtgttgctcatatgatctaaaggcatttattatgtgatttgaacaa---gaggagtgcgacgatttt |
97 |
Q |
| |
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|||||| |||||||||| |||||| || || || ||||||||||| |||||||| || ||||||||||| | |||| || | ||||||| | || |
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| T |
31563242 |
tgtgaagagtttcacaaccacattgttcgaattttgttgctcatacgatctaaacgcgtttattatgtgttgtgaataactcgccgagtgcggtggattc |
31563341 |
T |
|
| Q |
98 |
gtcttgttgcttgttcgttgatgatctatgaaaagtggtgctgatctccctctaagttgaataagatgttggacatagaaacaaataggattttccaaag |
197 |
Q |
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| T |
31563342 |
tccctgttgcatgttggttgatgatctatgaaaagtggagttgatcttcctctaagttgaataagatgtaggacatagaaacaaataggattctccaatg |
31563441 |
T |
|
| Q |
198 |
aagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttc |
297 |
Q |
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| T |
31563442 |
aagggtttgacatttcaagaagattaataatggatggtgtgttttcttgactatgtatacatgccatgagacttagttcggtatctgaagttgattgttc |
31563541 |
T |
|
| Q |
298 |
aatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgt |
366 |
Q |
| |
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||||||||||||| |||||||||| || ||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
31563542 |
aatggttcttctcctatttaaggataagtatttcttagatggatcatataggaatttcacaatgggtgt |
31563610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 31578596 - 31578964
Alignment:
| Q |
1 |
tgtgaaaagtttcacaatcacattatttgacttgtgttgctcatatgatctaaaggcatttattatgtgatttgaacaa---gaggagtgcgacgatttt |
97 |
Q |
| |
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|||||| |||||||||| ||||||||| || || ||||||||||| |||||||| |||||||||||||| | |||| || | ||||||| | || |
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| T |
31578596 |
tgtgaagagtttcacaaccacattattcgaattttgttgctcatacgatctaaaagcatttattatgtgttgtgaataactcgtcgagtgcggtggattc |
31578695 |
T |
|
| Q |
98 |
gtcttgttgcttgttcgttgatgatctatgaaaagtggtgctgatctccctctaagttgaataagatgttggacatagaaacaaataggattttccaaag |
197 |
Q |
| |
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|||||||| |||| |||||||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||||||||| ||||||| ||| | |
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| T |
31578696 |
tccttgttgcatgttggttgatgatctatgaaaactggtgttactcgtcctctaagttgaataagatgtaggacatagaaacaaattggatttttcaatg |
31578795 |
T |
|
| Q |
198 |
aagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttc |
297 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||| || ||||||||||||||||||||||| |
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| T |
31578796 |
aagggcttgacatttcaagaagattgataatggatggtgtgttttcttgactgtgtatacatgccaagatacgaagttcaatatctgaagttgattgttc |
31578895 |
T |
|
| Q |
298 |
aatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgt |
366 |
Q |
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||||||||||||| |||||||||| || || ||||||||||| |||||||||||||||| ||||||||| |
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| T |
31578896 |
aatggttcttctcctatttaaggataagtacctcttagatggatcatataggaatttcacaatgggtgt |
31578964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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