View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_high_23 (Length: 257)
Name: NF2038_high_23
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 3912436 - 3912203
Alignment:
| Q |
14 |
atataaaacattatccacatccctgaatgacttcttgatctccaacattgttgacccttcaattgagacattcaaacatattttagcattattgatacca |
113 |
Q |
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| T |
3912436 |
atataaaacattatccacatccctgaatgacttcttgatctccaacattgttgacccttcaattgagacattcaaacatattttagcattattgatacca |
3912337 |
T |
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| Q |
114 |
tataggcttcatcttgttaatatatacttcatgccaacattgttgaagttggaaacattattaaaagaaaattaacaagatccaaactataaccaagttt |
213 |
Q |
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| T |
3912336 |
tatagtcttcatcttgttaatatatacttcatgccaacattgttgaagttggaaacataattaaaagaaaattaacaagatccaaactataaccaagttt |
3912237 |
T |
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| Q |
214 |
aatgttattcaacagaaaaaagaaaaggagctgac |
248 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
3912236 |
aatgttattcaacaga-aaaagaaaaggagctgac |
3912203 |
T |
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