View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_high_6 (Length: 599)
Name: NF2038_high_6
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 61 - 583
Target Start/End: Complemental strand, 6830988 - 6830459
Alignment:
| Q |
61 |
agggcttatggaatggaacagatccctcaaggatcacttaacgtctttacctctactattcctcacggtgaagatgactacattgttttctcctatacta |
160 |
Q |
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| T |
6830988 |
agggcttatggaatggaacagatccctcaaggatcacttaacgtctttacctctactattcctcacggtgaagatgaatacattgttttctcctatacta |
6830889 |
T |
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| Q |
161 |
acggttctgagttgaattggaacaggataaattaacttctcctagagtatttgttaaaaaatggctagtataaagccccctcgcatggttttgaggaccg |
260 |
Q |
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| T |
6830888 |
acggttctgagttgaattggaacaggataaatcaacttctcctagagtatttgttaaaaaatggctagtataaagccccctcgcatggttttgaggaccg |
6830789 |
T |
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| Q |
261 |
tccgtgcttggccatgactagtga-------tagaaacttctcctattaaatcagcctattaatacctcactcaggatttgacctcacataccgaatctc |
353 |
Q |
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| T |
6830788 |
tccgtgcttggccatgactagtgagtagtgatggaaacttctcctattaaatcagcctatcaatacctcactcgggatttggcttcacatatcgaatctc |
6830689 |
T |
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| Q |
354 |
cttacaccttgccatggaattcaccatgtcctcaaaagatacaagaggaaacaatataatttgtcatggtcgccacctcacaaatgttgagcgcaaaatc |
453 |
Q |
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| T |
6830688 |
tttacaccttgccatggaattcaccatgtcctcaaaaaatacaagaggaaacaatataatttgtcatggtcgccacctcacaaatgttgagcgcaaaatc |
6830589 |
T |
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| Q |
454 |
tgtcacatgactaatgacgttactttacttgtgcttggtgtggtgaccaggaggaaacaattatgtgtttgcttcgacaccgtgaccacatctgagaaat |
553 |
Q |
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| T |
6830588 |
tgtcacatgactaatgacgttactttacttgtgcttggtgtggtgaccaggaggaaacaattatgtgtttgcttcgacaccgtgaccacatctgagaaat |
6830489 |
T |
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| Q |
554 |
ttgggatccccttattaaagaggatcattg |
583 |
Q |
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| T |
6830488 |
ttgggatccccttattaaagaggatcattg |
6830459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6831060 - 6831019
Alignment:
| Q |
17 |
tcaaatgtttactacatgctgtagatgaatatattggtaccg |
58 |
Q |
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| T |
6831060 |
tcaaatgtttactacatgctgtagatgaatatattggtaccg |
6831019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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