View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_high_9 (Length: 412)
Name: NF2038_high_9
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 45168918 - 45168609
Alignment:
| Q |
17 |
agagttatggcccagtaaatatgagggcccgtagagctatcccataagtttgactctctttgaatagagatagtgtgaagcatttgttga----taatca |
112 |
Q |
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| T |
45168918 |
agagttatggcccgataaatatgagggcccgtagagctatcccataagtctgactctctttgaatagagatagtgtgaagcatttgttgataattaatca |
45168819 |
T |
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| Q |
113 |
ctctttccttttgttttcctcatgaatcccaccattttcctatgtttag-aaccctaactctctttctctttgtgggttcaccgtaaaaagagagaaatg |
211 |
Q |
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| T |
45168818 |
ctctttccttttgttttcctcatgaatcccaccattttcctatgtttagaaaccctaac------tctctttgtgggttcaccgtaaaaagagagaaatg |
45168725 |
T |
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| Q |
212 |
aatccacattttgagaaaggctcttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaagtgagaaaagcatgttctta-ccctctag |
310 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
45168724 |
aatccacattttaagaaaggctgttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaaatgagaaaagcatgttcttacccctctag |
45168625 |
T |
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| Q |
311 |
atatgatgtacgaggg |
326 |
Q |
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|||||||||| ||||| |
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| T |
45168624 |
atatgatgtaagaggg |
45168609 |
T |
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