View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_12 (Length: 404)
Name: NF2038_low_12
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 44757510 - 44757882
Alignment:
| Q |
14 |
agaagctttaaacgcgataagagaaagtgaggaggaaggaattgtaatagaaagtgattactcggaatgcagctctaccactaacagaaccgcgtttcac |
113 |
Q |
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| T |
44757510 |
agaagcttcaaacgcgataagagaaagtgaggtggaaggaattgtaatagaaagtgattactcggaatgcagctctaccactaacagaaccgcgtttcac |
44757609 |
T |
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| Q |
114 |
tgtcgatcattggcaatagctgtaagcactaagtgtattttcttataataaataattatacgtaattcctaatcaaatagcatatcgttacaacatgctt |
213 |
Q |
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| T |
44757610 |
tgtcgatcattggcaatagctgtaagcactatgtgtattttcttataataaataattatacgtaattcctaatcaaatagcatatcgttacaacatgctt |
44757709 |
T |
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| Q |
214 |
attattgtataaaaacaaaataacgttgcatgaacttataggaaatgtactcgggttgaatgccaattgccccaacacaaagggcttttggaagagttta |
313 |
Q |
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| T |
44757710 |
attattgtataaaaacaaaataacgttgcatgaacttataggaaatgtactcgggttgaatgccaattgccccaacacaaagggcttttggaagagttta |
44757809 |
T |
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| Q |
314 |
tataacaatttttctcttctgtgaaatacatttgttgaccttgtgaaagcattttcctggtacatgactctcc |
386 |
Q |
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| T |
44757810 |
tataacaatttttctcttctgtgaaatacatttgttgaccttgtgaaagcattttcctggtacatgactctcc |
44757882 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 21223666 - 21223733
Alignment:
| Q |
26 |
cgcgataagagaaagtgaggaggaaggaattgtaatagaaagtgattactcggaatgcagctctacca |
93 |
Q |
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| T |
21223666 |
cgcgataagagaaagtgaggtggaaggaattgtgatagaaagtgattacttggaatgcacctctacca |
21223733 |
T |
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