View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_14 (Length: 382)
Name: NF2038_low_14
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 184048 - 183697
Alignment:
| Q |
13 |
cagacaagcatccacgattacatcttcattgcaagcaaatagttttgcccaatatatctcaagcactgcaaaatgtgcaatcagtatcagattcaagtta |
112 |
Q |
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| T |
184048 |
cagacaagcatccacgattacatcttcattgcaagcaaatagtcttgcccaatatatctcaagcactgcaaaatgtgcaatcagtatcagattcaagtta |
183949 |
T |
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| Q |
113 |
tgacctttcagtagttgaatcacttgagttggaagcagatttgcctccatacatgaaaaagagttgggaggtgacaaattcttgagttatgatcaaagtg |
212 |
Q |
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| T |
183948 |
tgacctttcagcagttgaatcacttgagttggaagcagatttgcctccatacatgaaaaagagttgggaggtgacaaattcttgagttatgatcaaagtg |
183849 |
T |
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| Q |
213 |
tagcagtctttttaattcacttggtttcatctttgtagcttcttccgtttgagattctgctatcaatttgatgccttcaagtgtgtttgtaacgtatgtt |
312 |
Q |
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| T |
183848 |
tagcagtctttttaattcacttggtttcatctttgtagcttcttccgtttgagattctgctatcaatttgatgccttcaagtgtgtttgtaacgtatgtt |
183749 |
T |
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| Q |
313 |
tcttgagaattcaattggcattgcattttccatatgttgaaaaggtcatttc |
364 |
Q |
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| T |
183748 |
tcttgagaattcaattggcattgcattttccatatgttgaaatggtcatttc |
183697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 104 - 355
Target Start/End: Complemental strand, 9124394 - 9124150
Alignment:
| Q |
104 |
ttcaagttatgacctttcagtagttgaatcacttgagttggaagcagatttgcctccatacatgaaaaagagttgggaggtgacaaattcttgagttatg |
203 |
Q |
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| T |
9124394 |
ttcaagtaataacctttcagtagttgaatcacttgagttagtagcggatttgcctccatacatgaaaaagagttg-------acaaattattgagttttg |
9124302 |
T |
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| Q |
204 |
atcaaagtgtagcagtctttttaattcacttggtttcatctttgtagcttcttccgtttgagattctgctatcaatttgatgccttcaagtgtgtttgta |
303 |
Q |
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| T |
9124301 |
atcaaagtgtagcagtctttttaattcacttggtttcatctttgtagcttcttccgtttgagattctgctatcaatttgatgccttcaagtgtgtttgta |
9124202 |
T |
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| Q |
304 |
acgtatgtttcttgagaattcaattggcattgcattttccatatgttgaaaa |
355 |
Q |
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|||||||| |||||| |||||||||||||| ||||||||||||||| |||| |
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| T |
9124201 |
acgtatgtctcttgatgattcaattggcattacattttccatatgttaaaaa |
9124150 |
T |
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