View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_15 (Length: 371)
Name: NF2038_low_15
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 49943491 - 49943842
Alignment:
| Q |
16 |
aagggaaagaataaagactttgaaatataattttgtttcagatttcatattcagaatgattaagtaatagttgataatagttctcacctaacttcactat |
115 |
Q |
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| T |
49943491 |
aagggaaagaataaagactttgaaatataattttgtttcagatttcatattcagaatgattaagtaataggtgataatagttctcacctaacttcactat |
49943590 |
T |
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| Q |
116 |
ctccatatgcaagtagcatcacagttgcccctctgaaatgaacagaatccaacataacgggaagagtacttctgacgtcttcaggctgcagagcatctac |
215 |
Q |
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| T |
49943591 |
ctccatatgcaagtagcatcacagttgcccctctgaaatgaacagaatccaacataacgggaagagtacttgtgaggtcttcaggctgcagagcatctac |
49943690 |
T |
|
| Q |
216 |
cccatctacatgttctgcaacaatatcgttatcatcatcgccatcggcaacatattctgtaattttgtcaacatcatcgtttaccaaatttgtatcaaga |
315 |
Q |
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| T |
49943691 |
cccatctacatgttctgcaacaatatcgttatcatcatcgccatcggcaacatattctgtaattttgtcaacatcatcgtttaccaaatttgtatcaaga |
49943790 |
T |
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| Q |
316 |
tttgtagaacaaaagcattcagaagacgatgaaggctctccagactttccct |
367 |
Q |
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| T |
49943791 |
tttgtagaacaaaagcattcagaagatgatgaaggctctccagactttccct |
49943842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 1904805 - 1904744
Alignment:
| Q |
118 |
ccatatgcaagtagcatcacagttgcccctctgaaatgaacagaatccaacataacgggaag |
179 |
Q |
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| T |
1904805 |
ccatatgcaagtagcatcaccgttgcacctttgaaatgaacagaatccaatataacaggaag |
1904744 |
T |
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