View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_19 (Length: 363)
Name: NF2038_low_19
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 12369837 - 12369508
Alignment:
| Q |
17 |
caatccctaccattttcccttgccgtattcatatatttccatacatctttgtatatatatannnnnnnnnnnnatcacccttgttttactttcatcagtc |
116 |
Q |
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| T |
12369837 |
caatccctaccattttcccttgccgtattcatatatttccataaatctttgtatatatat------tttttttatcacccttgttttactttcatcggtc |
12369744 |
T |
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| Q |
117 |
cactattcatattgaattggattcataactttgcttttaaacttcattcaaccgtaaagaactcattttgatttcaattgccgttttgtt----ttttat |
212 |
Q |
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| T |
12369743 |
cactattcatattgaattggattcataactttgcttttaaacttcattcaaccgtaaataactcattttgatttcaattgccattttgttttttttttat |
12369644 |
T |
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| Q |
213 |
tattcatccaaactcaattaattctcttgctgctacgtattatatctggattccaattagtaccttgtggctgtgcttctagtttcaattccaattgcct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |||| ||||| ||||||||||||||||||||||| |
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| T |
12369643 |
tattcatccaaactcaattaattctcttgctgctacgtgttatatctggatttcaattatta----gtggttgtgcctctagtttcaattccaattgcct |
12369548 |
T |
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| Q |
313 |
tttcatttatatcattgcatctgcgtttggattaattcat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
12369547 |
tttcatttatatcattgcatctgcgtttggattaattcat |
12369508 |
T |
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