View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2038_low_2 (Length: 797)

Name: NF2038_low_2
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2038_low_2
NF2038_low_2
[»] chr2 (3 HSPs)
chr2 (38-781)||(8772786-8773535)
chr2 (38-96)||(8775822-8775880)
chr2 (46-96)||(8787734-8787784)
[»] chr6 (1 HSPs)
chr6 (577-766)||(30858261-30858448)
[»] scaffold0311 (1 HSPs)
scaffold0311 (622-727)||(3811-3918)
[»] chr1 (1 HSPs)
chr1 (580-758)||(18960916-18961091)
[»] chr7 (2 HSPs)
chr7 (610-758)||(40707298-40707444)
chr7 (686-757)||(35753262-35753334)
[»] chr8 (1 HSPs)
chr8 (621-684)||(22470007-22470068)
[»] chr4 (1 HSPs)
chr4 (631-689)||(29808554-29808612)
[»] chr3 (1 HSPs)
chr3 (582-644)||(46670138-46670198)


Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 38 - 781
Target Start/End: Complemental strand, 8773535 - 8772786
Alignment:
Q  38 gttggtgaaatcttgcacaaaataaagattgttaattgctcactttcctctttaccaatcactctctctgcttaaccggaatcgaagactagaaagctag 137  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  8773535 gttggtgaaatcttgcacaaaatgaagattgttaattgctcattttcctctttaccaatcactctctctgcttaaccggaattgaagactagaaaactag 8773436  T
Q  138 cacaaaataggtactttacggaatatggatgtagtactgaacagttgatggaaagcgtacgggatctatgggctaagagatttttccacatcaagccaaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8773435 cacaaaataggtactttacggaatatggatgtagtactgaacagctaatggaaagcgtacgggatctacgggctaagagatttttccacatcaagccaaa 8773336  T
Q  238 gaaaattcaacctttgccgatagaccaatcaatggtgaaacaaaacctgcaagcacataaacttgatctttgaaaactaatacacctttatttatgtttt 337  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8773335 gaaaattcaacctttgccgatagaccaatcaatggtcaaacaaaacctgcaagcacataaacttgatctttgaaaactaatacacctttatttatgtttt 8773236  T
Q  338 ttatcataagaagttatgacatttcacccgtaatgaaaatcacaatacaacgtgaaatatgatt---nnnnnnnnncaacttgagactagctatggataa 434  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||    
T  8773235 ttatcataagaagttaagacatttcacccgtaatgaaaatcacaatacaacgtggaatatgattaaaaaaaaaaaaaaacttgagactagctatggataa 8773136  T
Q  435 tgtttcctgtagttaaagaatgagtcacattgtccatttctctcaacaaaacttacaatagtgccctttcataaataagaactttcactatagtgtgtta 534  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8773135 tgtttcctgtagttaaagaatgagtcacattatccatttctctcaacaaaacttacaatagtgtcctttcataaataagaactttcactatagtgagtta 8773036  T
Q  535 gaa---nnnnnnnnnnnngtttgatgcatgtgtgttagaattatttaaaaggaaaatactaaaatgtacgacaaatatttttcgttattattgcaagaca 631  Q
    |||                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8773035 gaatttctttcttttttttttttatgcatgtgtgttagaattatttaaaaggaaaatactaaaatgtacgacaaatatttttcgttattattgcaagaca 8772936  T
Q  632 atactaaaatgcttctcttttaatttttatatcactcaaaatgatccatttagcttctaaatgatatttttatcaaaaatattaaattgcacctttgttt 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8772935 atactaaaatgcttctcttttaatttttatatcactcaaaatgatccatttagcttctaaatgatatttttatcaaaaatataaaattgcacctttgttt 8772836  T
Q  732 ttatcacttatcaaaatcactcacgtttttgttttgtctttcctgttatt 781  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8772835 ttatcacttatcaaaatcactcacgtttttgttttgtctttcctgttatt 8772786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 8775880 - 8775822
Alignment:
Q  38 gttggtgaaatcttgcacaaaataaagattgttaattgctcactttcctctttaccaat 96  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  8775880 gttggtgcaatcttgcccaaaataaagattgttaattgctaacttttctctttaccaat 8775822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 8787734 - 8787784
Alignment:
Q  46 aatcttgcacaaaataaagattgttaattgctcactttcctctttaccaat 96  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  8787734 aatcttgcccaaaataaagattgttaattgctaacttttctctttaccaat 8787784  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 577 - 766
Target Start/End: Complemental strand, 30858448 - 30858261
Alignment:
Q  577 taaaaggaaaatactaaaatgtacgacaaatatttttcgttattattgcaagacaatactaaaatgcttctcttttaatttttatatcactcaaaatgat 676  Q
    ||||||||||| ||||||||| | ||| ||| |||| |||||||||| |  || || ||||||||||||   |||||||||||||||||||||| || ||    
T  30858448 taaaaggaaaacactaaaatgcatgactaatgtttt-cgttattattacgcgataagactaaaatgctttaattttaatttttatatcactcaagataat 30858350  T
Q  677 ccatttagcttctaaatgatatttttatcaaaaatattaaattgcacctttgtttttatcacttatcaaaatcactcacgtttttgtttt 766  Q
     ||| || ||| ||||||| ||| |||||| ||||||||| ||| |||||  ||||| ||||||||| ||||||||||||||||| ||||    
T  30858349 tcatctaacttgtaaatga-attcttatcataaatattaacttgtaccttcttttttctcacttatccaaatcactcacgtttttttttt 30858261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 622 - 727
Target Start/End: Original strand, 3811 - 3918
Alignment:
Q  622 ttgcaagacaatac--taaaatgcttctcttttaatttttatatcactcaaaatgatccatttagcttctaaatgatatttttatcaaaaatattaaatt 719  Q
    ||||| ||||||||  |||||||||||||| ||||||||||||   ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  3811 ttgcacgacaataccataaaatgcttctctgttaatttttatagttctcgaaatgatccattaagcttctaaatgatatttttatcagaaatattaaatt 3910  T
Q  720 gcaccttt 727  Q
     |||||||    
T  3911 acaccttt 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 580 - 758
Target Start/End: Original strand, 18960916 - 18961091
Alignment:
Q  580 aaggaaaatactaaaatgtacgacaaatatttttcgttattattgcaagacaatactaaaatgcttctcttttaatttttatatcactcaaaatgatcca 679  Q
    |||||||| ||||||||| | ||| ||| |||| ||||||||||  | ||||| |||||||||||||  |||||||||||||||||||||| || || ||    
T  18960916 aaggaaaacactaaaatgcatgactaatgtttt-cgttattattatacgacaagactaaaatgcttcaattttaatttttatatcactcaagataattca 18961014  T
Q  680 tttagcttctaaatgatatttttatcaaaaatattaaattgcacctttgtttttatcacttatcaaaatcactcacgtt 758  Q
    | || ||||| ||||  ||| |||||| ||||||||| |||||||||  ||||| ||||||||| ||||||| ||||||    
T  18961015 tctaacttctgaatg--attcttatcataaatattaacttgcaccttcttttttctcacttatccaaatcacccacgtt 18961091  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 610 - 758
Target Start/End: Complemental strand, 40707444 - 40707298
Alignment:
Q  610 ttttcgttattattgcaagacaatactaaaatgcttctcttttaatttttatatcactcaaaatgatccatttagcttctaaatgatatttttatcaaaa 709  Q
    ||||||||||||||||| |||| ||||||||||||||  |||| |||||||||| ||||||| | || |||||||| ||||||||| ||| |||||  ||    
T  40707444 ttttcgttattattgcacgaca-tactaaaatgcttcattttttatttttatattactcaaattaattcatttagcatctaaatga-attcttatcgtaa 40707347  T
Q  710 atattaaattgcacctttgtttttatcacttatcaaaatcactcacgtt 758  Q
    ||||||| ||||| |||  ||||| | ||||||| ||||||||||||||    
T  40707346 atattaacttgcatcttcttttttcttacttatccaaatcactcacgtt 40707298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 686 - 757
Target Start/End: Original strand, 35753262 - 35753334
Alignment:
Q  686 ttctaaatgatatttttatcaaaaatattaaattgcacc-tttgtttttatcacttatcaaaatcactcacgt 757  Q
    |||||||||||||||||||||  |||| ||||||| ||| ||| ||||| ||||||||| |||||| ||||||    
T  35753262 ttctaaatgatatttttatcaggaatactaaattgtaccttttttttttctcacttatccaaatcattcacgt 35753334  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 684
Target Start/End: Original strand, 22470007 - 22470068
Alignment:
Q  621 attgcaagacaatactaaaatgcttctcttttaatttttatatcactcaaaatgatccatttag 684  Q
    |||||| |||| ||||||| ||||||||||||||||||  ||| |||||||||||| |||||||    
T  22470007 attgcacgacactactaaattgcttctcttttaatttt--tatgactcaaaatgattcatttag 22470068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 689
Target Start/End: Complemental strand, 29808612 - 29808554
Alignment:
Q  631 aatactaaaatgcttctcttttaatttttatatcactcaaaatgatccatttagcttct 689  Q
    |||||||||||||||||||||| ||||||||||  |||||| ||||  |||||| ||||    
T  29808612 aatactaaaatgcttctcttttgatttttatatggctcaaattgatttatttagtttct 29808554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 644
Target Start/End: Complemental strand, 46670198 - 46670138
Alignment:
Q  582 ggaaaatactaaaatgtacgacaaatatttttcgttattattgcaagacaatactaaaatgct 644  Q
    ||||||||||||||||| | |||| |||||| ||||||||||||| |||| ||||||||||||    
T  46670198 ggaaaatactaaaatgtgctacaa-tatttt-cgttattattgcacgacagtactaaaatgct 46670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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