View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_21 (Length: 352)
Name: NF2038_low_21
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 5372755 - 5373078
Alignment:
| Q |
17 |
aataagatatcccgacagaaatcatattacaatgtaatagatattcatttagtagattcaacctctttcaataaatatttttctttacacattgtacatg |
116 |
Q |
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| T |
5372755 |
aataagatatcccgacagaaatcatattacaatgtaatagatattcatttagtagaatcaacctctttcaacaaatatttttctttacacattgtacatg |
5372854 |
T |
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| Q |
117 |
aatctaacttaagaagnnnnnnn-tatataattttcacaatatcaataatcacacgatataattgcaactatgattgtgaccacaannnnnnnaaagaaa |
215 |
Q |
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| T |
5372855 |
aatctaacttaagaagaaaaaaaatatataattttcacaatatcaataatcacacgatataattgcaactatgattgtgaccacaatttttttaaagaaa |
5372954 |
T |
|
| Q |
216 |
ataaggcatgcaaagatatcattatagggcaagaaatcccaactattttacttatataaaaccttttcaacaacaacaacaagtgtttcttttaataaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5372955 |
ataaggcatgcaaagatatcattatagggcaagaaatcccaactattttacttatataaaacctttt---caacaacaacaagtgtttcttttaataaaa |
5373051 |
T |
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| Q |
316 |
aacctatgcagattgataatgtctctg |
342 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5373052 |
aacctatgcagattgataatgtctctg |
5373078 |
T |
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