View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2038_low_23 (Length: 346)

Name: NF2038_low_23
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2038_low_23
NF2038_low_23
[»] chr7 (46 HSPs)
chr7 (145-346)||(21131938-21132140)
chr7 (195-346)||(18660100-18660251)
chr7 (207-346)||(21112978-21113117)
chr7 (14-127)||(21128190-21128303)
chr7 (14-122)||(16492382-16492490)
chr7 (21-118)||(2853064-2853161)
chr7 (26-118)||(9395886-9395978)
chr7 (26-122)||(19222264-19222360)
chr7 (19-122)||(22324434-22324537)
chr7 (19-122)||(16671757-16671860)
chr7 (19-122)||(17646125-17646228)
chr7 (19-122)||(45419484-45419587)
chr7 (26-119)||(27712408-27712501)
chr7 (26-118)||(2354520-2354612)
chr7 (26-118)||(16362546-16362638)
chr7 (20-118)||(12140705-12140803)
chr7 (21-118)||(4680749-4680846)
chr7 (18-122)||(9141809-9141913)
chr7 (18-122)||(16671400-16671503)
chr7 (18-122)||(17645768-17645871)
chr7 (19-118)||(18487306-18487406)
chr7 (30-118)||(1566361-1566449)
chr7 (26-114)||(11649869-11649957)
chr7 (26-118)||(22773758-22773850)
chr7 (279-346)||(21124375-21124442)
chr7 (19-122)||(40449952-40450053)
chr7 (21-114)||(40409357-40409450)
chr7 (20-92)||(4681478-4681550)
chr7 (27-86)||(11649748-11649807)
chr7 (61-119)||(34837595-34837653)
chr7 (61-122)||(23591306-23591367)
chr7 (61-122)||(23591521-23591582)
chr7 (61-122)||(27716422-27716483)
chr7 (26-86)||(11649808-11649868)
chr7 (48-118)||(18486790-18486861)
chr7 (61-122)||(4681037-4681098)
chr7 (20-89)||(34837702-34837771)
chr7 (62-122)||(35124886-35124946)
chr7 (18-86)||(9395979-9396047)
chr7 (73-118)||(45419744-45419789)
chr7 (19-84)||(2354452-2354517)
chr7 (61-122)||(48640908-48640966)
chr7 (52-114)||(40686800-40686861)
chr7 (19-72)||(6250027-6250081)
chr7 (302-346)||(21106849-21106893)
chr7 (83-122)||(34837338-34837378)
[»] chr3 (17 HSPs)
chr3 (11-122)||(51654173-51654284)
chr3 (19-122)||(36642976-36643079)
chr3 (19-117)||(837052-837150)
chr3 (26-118)||(43017427-43017519)
chr3 (14-122)||(53047435-53047542)
chr3 (29-122)||(20877076-20877172)
chr3 (19-118)||(35560262-35560361)
chr3 (45-122)||(11522687-11522764)
chr3 (20-122)||(18095110-18095212)
chr3 (61-120)||(38887473-38887532)
chr3 (19-119)||(40051011-40051111)
chr3 (19-111)||(860227-860323)
chr3 (21-92)||(46452362-46452433)
chr3 (60-122)||(38887687-38887749)
chr3 (71-118)||(47502951-47502998)
chr3 (33-118)||(37760655-37760730)
chr3 (14-57)||(47502907-47502949)
[»] chr5 (27 HSPs)
chr5 (26-122)||(16305501-16305597)
chr5 (20-118)||(43394801-43394899)
chr5 (18-118)||(41511059-41511159)
chr5 (26-118)||(13035056-13035148)
chr5 (26-118)||(13105030-13105122)
chr5 (19-122)||(14166033-14166136)
chr5 (19-122)||(19122393-19122496)
chr5 (26-118)||(10409682-10409774)
chr5 (14-122)||(7127725-7127832)
chr5 (30-112)||(7672987-7673069)
chr5 (30-118)||(38110022-38110107)
chr5 (20-104)||(23138169-23138253)
chr5 (30-118)||(26523019-26523107)
chr5 (26-118)||(38004521-38004615)
chr5 (32-118)||(35159861-35159947)
chr5 (64-122)||(24326062-24326120)
chr5 (64-122)||(24347649-24347707)
chr5 (55-122)||(19122057-19122124)
chr5 (33-86)||(13104976-13105029)
chr5 (64-122)||(24271028-24271085)
chr5 (33-86)||(13035002-13035055)
chr5 (21-86)||(26522949-26523014)
chr5 (26-86)||(41092692-41092752)
chr5 (26-93)||(41092753-41092820)
chr5 (57-119)||(9487947-9488009)
chr5 (20-63)||(24347407-24347450)
chr5 (21-63)||(24326319-24326361)
[»] chr1 (31 HSPs)
chr1 (14-122)||(3227068-3227175)
chr1 (19-122)||(51272338-51272441)
chr1 (20-122)||(21617909-21618011)
chr1 (26-118)||(44099528-44099620)
chr1 (31-122)||(45417462-45417553)
chr1 (26-118)||(318712-318804)
chr1 (14-121)||(21618112-21618219)
chr1 (31-122)||(38684172-38684263)
chr1 (29-118)||(24595370-24595459)
chr1 (19-118)||(1155910-1156009)
chr1 (31-118)||(42492020-42492107)
chr1 (19-122)||(44262819-44262921)
chr1 (21-122)||(44263462-44263563)
chr1 (30-122)||(1647697-1647789)
chr1 (14-117)||(4100436-4100538)
chr1 (19-122)||(5428682-5428785)
chr1 (32-122)||(16165551-16165641)
chr1 (30-116)||(30084120-30084206)
chr1 (20-116)||(28949742-28949838)
chr1 (26-122)||(47790801-47790893)
chr1 (20-118)||(48411818-48411916)
chr1 (33-122)||(25931810-25931899)
chr1 (34-118)||(27296492-27296574)
chr1 (33-118)||(12115464-12115549)
chr1 (61-122)||(44263241-44263302)
chr1 (19-86)||(44099460-44099527)
chr1 (61-119)||(6537538-6537596)
chr1 (61-122)||(52740853-52740914)
chr1 (19-87)||(18912541-18912609)
chr1 (68-122)||(4100692-4100746)
chr1 (62-122)||(44263030-44263086)
[»] chr6 (16 HSPs)
chr6 (20-119)||(26832367-26832466)
chr6 (19-122)||(29201696-29201799)
chr6 (21-118)||(25068348-25068445)
chr6 (14-122)||(808982-809089)
chr6 (26-118)||(9829078-9829170)
chr6 (21-122)||(1393701-1393802)
chr6 (21-122)||(4100167-4100267)
chr6 (32-122)||(17906665-17906755)
chr6 (21-111)||(4810917-4811007)
chr6 (55-122)||(17203002-17203069)
chr6 (60-118)||(808628-808686)
chr6 (61-119)||(23610587-23610644)
chr6 (61-122)||(17201747-17201808)
chr6 (61-122)||(17202781-17202842)
chr6 (20-76)||(23622425-23622481)
chr6 (56-112)||(23622364-23622420)
[»] chr4 (36 HSPs)
chr4 (195-346)||(39130647-39130798)
chr4 (21-118)||(23952355-23952452)
chr4 (21-118)||(47769111-47769208)
chr4 (26-122)||(8397601-8397697)
chr4 (26-118)||(12795974-12796066)
chr4 (14-121)||(52689262-52689369)
chr4 (20-122)||(24049718-24049820)
chr4 (21-122)||(24049437-24049538)
chr4 (21-122)||(52689470-52689571)
chr4 (26-118)||(8479001-8479093)
chr4 (20-118)||(36639504-36639602)
chr4 (20-122)||(54653501-54653603)
chr4 (14-118)||(22293052-22293155)
chr4 (21-116)||(8397476-8397571)
chr4 (19-122)||(12899708-12899811)
chr4 (26-110)||(21581132-21581216)
chr4 (46-126)||(41852021-41852102)
chr4 (18-92)||(29967318-29967392)
chr4 (33-122)||(53144712-53144801)
chr4 (61-122)||(7821456-7821517)
chr4 (61-122)||(22292835-22292896)
chr4 (14-86)||(8478930-8479001)
chr4 (26-86)||(21581071-21581131)
chr4 (26-86)||(47631781-47631841)
chr4 (26-121)||(4941830-4941920)
chr4 (61-122)||(8118535-8118596)
chr4 (61-118)||(28380079-28380136)
chr4 (61-122)||(28379869-28379930)
chr4 (21-118)||(32962805-32962895)
chr4 (30-86)||(12795917-12795973)
chr4 (20-71)||(7821706-7821757)
chr4 (61-102)||(7809488-7809529)
chr4 (26-87)||(47631718-47631779)
chr4 (31-71)||(7809712-7809752)
chr4 (94-122)||(7809686-7809714)
chr4 (94-122)||(7821680-7821708)
[»] chr8 (21 HSPs)
chr8 (29-122)||(1198031-1198124)
chr8 (26-118)||(3990306-3990398)
chr8 (30-122)||(27853535-27853627)
chr8 (21-112)||(3458986-3459077)
chr8 (20-122)||(30205933-30206035)
chr8 (26-118)||(37197533-37197625)
chr8 (20-122)||(30438893-30438998)
chr8 (26-119)||(34947629-34947722)
chr8 (26-118)||(42045818-42045911)
chr8 (21-118)||(23960430-23960527)
chr8 (26-122)||(27854276-27854372)
chr8 (33-118)||(32062975-32063059)
chr8 (62-122)||(23960696-23960756)
chr8 (19-86)||(3990399-3990466)
chr8 (29-122)||(9388914-9389007)
chr8 (32-113)||(13797588-13797669)
chr8 (52-122)||(35617836-35617906)
chr8 (20-122)||(40399365-40399457)
chr8 (61-122)||(38111275-38111336)
chr8 (84-118)||(29579053-29579087)
chr8 (61-101)||(14683115-14683155)
[»] chr2 (21 HSPs)
chr2 (21-118)||(12896277-12896374)
chr2 (19-122)||(28611659-28611762)
chr2 (26-122)||(37131344-37131440)
chr2 (26-118)||(44256631-44256723)
chr2 (26-116)||(12898176-12898266)
chr2 (49-122)||(10129380-10129453)
chr2 (30-118)||(41326523-41326611)
chr2 (21-116)||(627741-627836)
chr2 (14-122)||(11657601-11657709)
chr2 (21-118)||(6348228-6348326)
chr2 (61-122)||(28611916-28611977)
chr2 (19-108)||(41995603-41995692)
chr2 (18-118)||(29550296-29550396)
chr2 (61-122)||(28612763-28612824)
chr2 (61-122)||(28612553-28612613)
chr2 (62-122)||(28612130-28612190)
chr2 (61-122)||(28612341-28612401)
chr2 (63-122)||(11736066-11736125)
chr2 (30-122)||(14336585-14336673)
chr2 (19-86)||(44256724-44256791)
chr2 (28-86)||(12898267-12898325)
[»] scaffold0240 (1 HSPs)
scaffold0240 (21-118)||(13414-13511)
[»] scaffold0018 (2 HSPs)
scaffold0018 (26-116)||(163653-163747)
scaffold0018 (18-86)||(163584-163652)
[»] scaffold0320 (1 HSPs)
scaffold0320 (26-118)||(14433-14529)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 145 - 346
Target Start/End: Complemental strand, 21132140 - 21131938
Alignment:
Q  145 tagctatctaatttt-atctcctctaatttcttcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaacaccggtaacatcctc 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  21132140 tagctatctaatttttatctcctctaatttcttcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctc 21132041  T
Q  244 ttgcttgatgcgggtcaacactacacttggtcttcaaacacagcattagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtg 343  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21132040 ttgcttgatgcgggtcaacactacacttggtcttcaaacacggcatcagatgctccgttagagttgtatctcaaagaagatggtaatcttgtgttacgtg 21131941  T
Q  344 agc 346  Q
    |||    
T  21131940 agc 21131938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 195 - 346
Target Start/End: Complemental strand, 18660251 - 18660100
Alignment:
Q  195 aacaggtaagctctcaaagcttttcctcttaaacaccggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacagcattagat 294  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||    
T  18660251 aacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacacttggtcttcaaacacagcatcaaat 18660152  T
Q  295 gctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagc 346  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18660151 gcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagc 18660100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 21113117 - 21112978
Alignment:
Q  207 ctcaaagcttttcctcttaaacaccggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacagcattagatgctccattagag 306  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  21113117 ctcaaagcttttcctcttaaacacaggtaacatcatcttgctcgatgcgggtcaacataacacttggtcttcaaacacggcatcagatgctccattagag 21113018  T
Q  307 ttgtatctcaaagaagatggtaatcttgtgttacgtgagc 346  Q
    |||||||| | ||||||||| |||||||||||||||||||    
T  21113017 ttgtatcttagagaagatgggaatcttgtgttacgtgagc 21112978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 21128303 - 21128190
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  21128303 aatcccaaaaacaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatggtttctagaacaaacgtgcaacatcaaataagtgtagaaaa 21128204  T
Q  114 tatttccttgaaag 127  Q
    ||||||||| ||||    
T  21128203 tatttccttcaaag 21128190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 16492382 - 16492490
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  16492382 aatccaaaaaaaaaagtataaaatagaaggcatcaaatgtgatcattgatatgctcatagtttttagaacaaacgtgcaacatcaaataagtgtagaaaa 16492481  T
Q  114 tatttcctt 122  Q
    |||||||||    
T  16492482 tatttcctt 16492490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 2853064 - 2853161
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2853064 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 2853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 9395978 - 9395886
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9395978 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcatcatcaaataagtgtagaaaatattt 9395886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 19222360 - 19222264
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  19222360 aaagtataaaatagaaggcatcaaacgtgatcattgatatactcatagtttctagaacaaacatgcatcatcaaataagtgtagaaaatatttcctt 19222264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 22324537 - 22324434
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22324537 aaaaaaaaacgtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgtcgcatcaaataagtgtagaaaatattt 22324438  T
Q  119 cctt 122  Q
    ||||    
T  22324437 cctt 22324434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 16671860 - 16671757
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  16671860 aaaaaaaagagtataaaatagaaggcatcaaacgtgatcattgatatgctcaaaatttctagaacaaacgtgcaacatcaaataaatgtagaaaatattt 16671761  T
Q  119 cctt 122  Q
    ||||    
T  16671760 cctt 16671757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 17646228 - 17646125
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  17646228 aaaaaaaagagtataaaatagaaggcatcaaacgtgatcattgatatgctcaaaatttctagaacaaacgtgcaacatcaaataaatgtagaaaatattt 17646129  T
Q  119 cctt 122  Q
    ||||    
T  17646128 cctt 17646125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 45419484 - 45419587
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||    
T  45419484 aaaaaaaaaaatataaaatagaaggcatcaaacgtgatcattgatatgctcatgatttttagaacaaacgtgcaacatcaaataagtgtagaaaatattt 45419583  T
Q  119 cctt 122  Q
    ||||    
T  45419584 cctt 45419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 27712408 - 27712501
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  27712408 aaagtataaaatagaaggcatcaaacgtgatcatcgatatgctcatagtttctagaacaaacatgcaacgtcaaataagtgtagaaaatatttc 27712501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 2354520 - 2354612
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  2354520 aaagtataaaatagaagacatcaaacgtgatcattgatatgctcatagtttttagaacaaacgtgcaaaatcaaataagtgtagaaaatattt 2354612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 16362546 - 16362638
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16362546 aaagtataacataaaatgtatcaaacgtgatcattaatatgctcatagtttctagaacaaacgtgcaccatcaaataagtgtagaaaatattt 16362638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 12140705 - 12140803
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  12140705 aaaaaaaaagtataaaatagaaggtatcaaacgtgatcattgatatgctcaaagtttctaggacaaacgtgcatcatcaaataagtgcagaaaatattt 12140803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 4680749 - 4680846
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  4680749 aaaaaaaagtataaaatagaaggcatcaaacgtgatccttgatatgctcgtagtttctagaacaaaggtttagcatcaaataagtgtagaaaatattt 4680846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 9141809 - 9141913
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||| |||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| ||||    
T  9141809 caaaaaaaaaagtataaaatagaaggtatcaaacgtaatcattgatatgttcatagtttctagaacaaatgtgcaacatcaaataagtgaagaaattatt 9141908  T
Q  118 tcctt 122  Q
    |||||    
T  9141909 tcctt 9141913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 16671503 - 16671400
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  16671503 caaaaaaaaaagtataaaagagaa-gcattaaacgtgatcattgatatgctcgtagtttctagaacaaacgtgcttcatcaaataagtgtaaaaaatatt 16671405  T
Q  118 tcctt 122  Q
    |||||    
T  16671404 tcctt 16671400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 17645871 - 17645768
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  17645871 caaaaaaaaaagtataaaagagaa-gcattaaacgtgatcattgatatgctcgtagtttctagaacaaacgtgcttcatcaaataagtgtaaaaaatatt 17645773  T
Q  118 tcctt 122  Q
    |||||    
T  17645772 tcctt 17645768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 18487406 - 18487306
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctag-aacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  18487406 aaaaaaaaaagtataaaatagaagccatcaaacgtgatcattgatatgctcgaagtttctagaaacaaacatgcagcatcaaataagtgtagaaaatatt 18487307  T
Q  118 t 118  Q
    |    
T  18487306 t 18487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 1566361 - 1566449
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  1566361 tataaaatagaaggtatcaaacgtgatcattgatatgctcatagtttctagaacaagcgtgtaacatcatataagtgtagaaaatattt 1566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 11649869 - 11649957
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaat 114  Q
    ||||||||||||||||  ||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||    
T  11649869 aaagtataaaatagaagccatcaaacgtgatcattgatatgcttatggtttctggaacaaacgtgcaacatcaaataagtgtagaaaat 11649957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 22773758 - 22773850
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  22773758 aaagtataaagtataaggtatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcgacatcaaataagtatagaaaatattt 22773850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 21124442 - 21124375
Alignment:
Q  279 aaacacagcattagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagc 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21124442 aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagc 21124375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 40449952 - 40450053
Alignment:
Q  19 aaaaaacaa-agtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||||| ||||||||||||||  |||||||  |||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||    
T  40449952 aaaaaacaagagtataaaatagaagacatcaaatttgatcattgatatgctcatagtttcta---caaacgtgcaacatcaaataagtgtagaaaatatt 40450048  T
Q  118 tcctt 122  Q
    |||||    
T  40450049 tcctt 40450053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 40409357 - 40409450
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaat 114  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||| ||| ||| |||||| |||||||| |||||||||||||||||||||    
T  40409357 aaaaaaaagtataaaatagaaggcatcaaatgtgatcattgatatgcttatattttatagaacgaacgtgcatcatcaaataagtgtagaaaat 40409450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 4681478 - 4681550
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgca 92  Q
    ||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4681478 aaaaaaaaagtataaaatagaaggcatcaaacgtcattattgatatgctcatagtttctagaacaaacgtgca 4681550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 11649748 - 11649807
Alignment:
Q  27 aagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11649748 aagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 11649807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 34837653 - 34837595
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34837653 gatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatatttc 34837595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 23591306 - 23591367
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  23591306 gatatgctcatagtttctagaacaaaagtgcagtatcaaataagtgtagaaaatatttcctt 23591367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 23591521 - 23591582
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  23591521 gatatgctcatagtttctagaacaaacgtgcaacatcaaataagagtagaaaatatttcctt 23591582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 27716422 - 27716483
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  27716422 gatatgctcatagttcctagaacaaacgtgcaacatcaaataagtgtagaaaatatttcctt 27716483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 11649808 - 11649868
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11649808 aaagtataaaatagaagccatcaaacgtgatcattgatatgctcatagtttctagaacaaa 11649868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 18486861 - 18486790
Alignment:
Q  48 aaacgtgatcattgatatgctcatagtttctagaa-caaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  18486861 aaacgtgatcattgatatgctcgaagtttctagaaacaaacatgcagcatcaaataagtgtagaaaatattt 18486790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 4681037 - 4681098
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  4681037 gatattctcatagtttctagaacaaaagtgcaacatcaaataagtgtagaaaatatttcctt 4681098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 34837771 - 34837702
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgt 89  Q
    ||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  34837771 aaaaaaaaggtataaaatagaaggcataaaacgtgatcattgatatgctcatagtttctggaacaaacgt 34837702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 35124946 - 35124886
Alignment:
Q  62 atatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  35124946 atatgctcatagtttctagaataaatgtgcatcatcaaataagtgtagaaaatatttcctt 35124886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9396047 - 9395979
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||| ||||||||||||| |||||||||    
T  9396047 caaaaaaaaaagtataaaatagaagtcatcaaacgtcatcattgacatgctcatagtttttagaacaaa 9395979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 45419744 - 45419789
Alignment:
Q  73 gtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  45419744 gtttctagaacaaatgtgcagcatcaaataagtgtagaaaatattt 45419789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2354452 - 2354517
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaaca 84  Q
    |||||| |||||||||||||||| || ||||||||||||| |||| || |||||||||||| ||||    
T  2354452 aaaaaaaaaagtataaaatagaaggcgtcaaacgtgatcactgatgtgatcatagtttctaaaaca 2354517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 48640908 - 48640966
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||| |||||||||||| |||||||||||| |   ||||||||||||||    
T  48640908 gatatgctcatagtttccagaacaaacgtgaagcatcaaataaat---gaaaatatttcctt 48640966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 40686800 - 40686861
Alignment:
Q  52 gtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaat 114  Q
    ||||||||| || |||||||||||| ||||||||| |||||  ||||||||||||||||||||    
T  40686800 gtgatcatt-atttgctcatagtttttagaacaaatgtgcaatatcaaataagtgtagaaaat 40686861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6250081 - 6250027
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatca-aacgtgatcattgatatgctcata 72  Q
    |||||| || ||||||||||||| |||||| || |||||||||||||||||||||    
T  6250081 aaaaaaaaatgtataaaatagaaggcatcataaggtgatcattgatatgctcata 6250027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 21106849 - 21106893
Alignment:
Q  302 tagagttgtatctcaaagaagatggtaatcttgtgttacgtgagc 346  Q
    |||||||| |||||||||| ||||| ||||||||||| |||||||    
T  21106849 tagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagc 21106893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 34837378 - 34837338
Alignment:
Q  83 caaacgtgcagcatcaaataagtgtag-aaaatatttcctt 122  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  34837378 caaacgtgcagaatcaaataagtgtagaaaaatatttcctt 34837338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 51654284 - 51654173
Alignment:
Q  11 aataatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtaga 110  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51654284 aataatccaaaaaaaagagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaaagtgcagcatcaaataagtgtaga 51654185  T
Q  111 aaatatttcctt 122  Q
    ||||||||||||    
T  51654184 aaatatttcctt 51654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 36642976 - 36643079
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36642976 aaaaaaaagagtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 36643075  T
Q  119 cctt 122  Q
    ||||    
T  36643076 cctt 36643079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 837052 - 837150
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  837052 aaaaaaaaaagtataaaacagaatgcatcaaacgtgatcattgatatgctcatagtttctaaaacaaacgtgcaacatcaaataagtgtagaaaatatt 837150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 43017519 - 43017427
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  43017519 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataaatgtagaaaatattt 43017427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 53047435 - 53047542
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  53047435 aatccaaaaaa-aaaggataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgcaacatgaaataagtgtagaaaa 53047533  T
Q  114 tatttcctt 122  Q
    |||||||||    
T  53047534 tatttcctt 53047542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 20877076 - 20877172
Alignment:
Q  29 gtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatca---aataagtgtagaaaatatttcctt 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  20877076 gtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataataagtgtagaaaatatttcctt 20877172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 35560361 - 35560262
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  35560361 aaaaaaaaaagtataaaatagaatgcatcaaatgtgatcattgatattctcatagtttctataacaaacgtgcgacatcaaataagtgtagaaaatattt 35560262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 11522764 - 11522687
Alignment:
Q  45 atcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522764 atcaaacgtgatcattgatatgttcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 11522687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 18095212 - 18095110
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||| |||||    
T  18095212 aaaaaaaaagtataagatagaaggcatcaaacgtgatcattgatatgctcatagtttcgagaccaaacgtgcaacatcaaataagtgtaaaaaaaatttc 18095113  T
Q  120 ctt 122  Q
    |||    
T  18095112 ctt 18095110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 38887473 - 38887532
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38887473 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 38887532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 40051111 - 40051011
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| |||||||| || |||| ||||||||||| ||||| |||||  |||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  40051111 aaaaaaaaaagtatagaacagaaggcatcaaacgtaatcatcgatattgtcatagtttctagaacaatcgtgcaacatcaaataagtgtaaaaaatattt 40051012  T
Q  119 c 119  Q
    |    
T  40051011 c 40051011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 860323 - 860227
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgata----tgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaa 111  Q
    |||||| || ||||||||||||| || |||||||||||||||||||    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  860323 aaaaaaaaatgtataaaatagaaggcttcaaacgtgatcattgatagatatgctcatagtttctagaataaatgtgcagcatcaaataagtgtagaa 860227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 46452433 - 46452362
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgca 92  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  46452433 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctgaaacaaacgtgca 46452362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 38887687 - 38887749
Alignment:
Q  60 tgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38887687 tgatatgctcgtagtttctagaacaaacgtgcatcatcaaataagtgtagaaaatatttcctt 38887749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 47502951 - 47502998
Alignment:
Q  71 tagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  47502951 tagtttctagaacaaacgtgcaacatcaaataagtgcagaaaatattt 47502998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 37760730 - 37760655
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||  |||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||||||||    
T  37760730 aaaatagaagacatcaaacgtgatcattgatatgctcata----------caaacgtgcaacatcaaataagtgtagaaaatattt 37760655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 47502907 - 47502949
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatc 57  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  47502907 aatccaaaaaa-aaagtataaaatagaaggcatcaaacgtgatc 47502949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 16305597 - 16305501
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16305597 aaagtataaaatagaagacatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 16305501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 43394801 - 43394899
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  43394801 aaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacatgcaacatcaaataagtgtagaaaatattt 43394899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 41511159 - 41511059
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  41511159 caaaaaaaaaagtataaaatagaaagtatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaatcagtgtagaaaatatt 41511060  T
Q  118 t 118  Q
    |    
T  41511059 t 41511059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 13035056 - 13035148
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  13035056 aaagtataaaatagaagacatcaaacgtgatcattgatatgctcatagtttctaaaacaaacgtgcatcatcaaataagtgtagaaaatattt 13035148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 13105030 - 13105122
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  13105030 aaagtataaaatagaaggcatcaaacgtgattattgatatgctcatagtttctaaaacaaacgtgcatcatcaaataagtgtagaaaatattt 13105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 14166033 - 14166136
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  14166033 aaaaaataaagtataaaatagaagacattaaacgtgatcattgatatgctcatagtttctagaacaaacgcgcaacatcaaataaatgtagaaaatattt 14166132  T
Q  119 cctt 122  Q
    ||||    
T  14166133 cctt 14166136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 19122496 - 19122393
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  19122496 aaaaaaaaaagtataaaatagattgcatcaaacatgatcattgatacgctcatagtttctaaaacaaacgtgcaacatcaaataagtgtggaaaatattt 19122397  T
Q  119 cctt 122  Q
    ||||    
T  19122396 cctt 19122393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 10409774 - 10409682
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  10409774 aaagtataaaatagacggcatcaaatgtgatcattgatatgctcatagtttctagaacaaatgtgcaacatcaaataagtgtagaaaatattt 10409682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 7127832 - 7127725
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||| | ||||||||||||||    
T  7127832 aatccaaaaaaaaaa-tataaaatagaaggcatcaaacgtgatcatcgatatactcatagtttttagaacaaatgtgcagcattagataagtgtagaaaa 7127734  T
Q  114 tatttcctt 122  Q
    |||||||||    
T  7127733 tatttcctt 7127725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 7672987 - 7673069
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaa 112  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  7672987 tataaagtagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcatcatcaaataaatgtagaaa 7673069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 38110107 - 38110022
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  38110107 tatataatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgt---gcatcaaataagtgtagaaaatattt 38110022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 23138253 - 23138169
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataag 104  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  23138253 aaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctgcaacaaatgtgcagcatcaaataag 23138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 26523019 - 26523107
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26523019 tataaaatagaagacatcaaaggtgatcattgagatgctcatagtttctagaacaaacgtgaagcatcaaataaatgtagaaaatattt 26523107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 38004521 - 38004615
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatat--gctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||||||  || |||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38004521 aaagtataaaatagaagacagcaaacgtgatcatttatatatgctcatagtttttagaacaaacgtgcagcatcaaataagtgtagaaaatattt 38004615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 35159947 - 35159861
Alignment:
Q  32 taaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  35159947 taaaatagaaggcatcaaatgtgatcattgatatgctcatagtctctagaacaaacgtacaacatcaaataggtgtagaaaatattt 35159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 24326120 - 24326062
Alignment:
Q  64 atgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24326120 atgctcatagtttatagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 24326062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 24347649 - 24347707
Alignment:
Q  64 atgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24347649 atgctcatagtttatagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 24347707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 19122124 - 19122057
Alignment:
Q  55 atcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||    
T  19122124 atcattgatacgctcatagtttctaaaacaaacgtgcaacatcaaataagtgtggaaaatatttcctt 19122057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 13104976 - 13105029
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13104976 aaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 13105029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 24271028 - 24271085
Alignment:
Q  64 atgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  24271028 atgctcatagtttatagaacaaacgtgcagcatcaaataagtgtag-aaatatttcctt 24271085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 13035002 - 13035055
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  13035002 aaaatagaaggtatcaaacgtgatcattgatatgctcatagtttctagaacaaa 13035055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 26522949 - 26523014
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  26522949 aaaaaaaagtatataatagaaggcatcaaatgtgatcattgatatgttcatagtttctagaacaaa 26523014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 41092692 - 41092752
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||    
T  41092692 aaagtataaaatagaagacatcaaacgtgatcattgatatgcttatagtttttagaacaaa 41092752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 41092753 - 41092820
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcag 93  Q
    |||||||||||| |||  |||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  41092753 aaagtataaaatggaagacatcaaacgtgatcattgatagactcatagtttctagaacaaacttgcag 41092820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 9487947 - 9488009
Alignment:
Q  57 cattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||||||||||||||||||||| |||||||||  | ||| ||||||||||||||||| ||||    
T  9487947 cattgatatgctcatagtttctaaaacaaacgttgatcattaaataagtgtagaaaatctttc 9488009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 24347407 - 24347450
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgat 63  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  24347407 aaaaaaaaagtataaaacagaaggcatcaaacgtgatcattgat 24347450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 24326361 - 24326319
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgat 63  Q
    |||| ||||||||||| |||| |||||||||||||||||||||    
T  24326361 aaaaaaaagtataaaacagaaggcatcaaacgtgatcattgat 24326319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 3227068 - 3227175
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3227068 aatccaaaaaa-aaagtataaaatagaaggcatcaaacgtgatcattgatatactcatagtttctagaataaacgtgcagcatcaaataagtgtagaaaa 3227166  T
Q  114 tatttcctt 122  Q
    |||||||||    
T  3227167 tatttcctt 3227175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 51272338 - 51272441
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51272338 aaaaaaaaaagtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtcgaaaatattt 51272437  T
Q  119 cctt 122  Q
    ||||    
T  51272438 cctt 51272441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 21618011 - 21617909
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  21618011 aaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttttaggacaaacgtgcagcatcaaataagtgtagaaaatatttc 21617912  T
Q  120 ctt 122  Q
    |||    
T  21617911 ctt 21617909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 44099528 - 44099620
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44099528 aaagtataaaatagaatgcatcaaacgtcatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtaaaaaatattt 44099620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 45417462 - 45417553
Alignment:
Q  31 ataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45417462 ataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaataaacgtgcagcatcaaataagtgtagaaaatatttcctt 45417553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 318804 - 318712
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  318804 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttatagaacaaacgtgcatcatcaaataagtgtagaaaatattt 318712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 21618219 - 21618112
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  21618219 aatccaaaagaaaaagtataaaatagaaggcatcaaacgtgataattgatatgctcatagtttctagagaaaacgtgcaacatcaaataagtgtagaaaa 21618120  T
Q  114 tatttcct 121  Q
    ||||||||    
T  21618119 tatttcct 21618112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 38684263 - 38684172
Alignment:
Q  31 ataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  38684263 ataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagtatcaaataagtgtataaaatatttcctt 38684172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 24595459 - 24595370
Alignment:
Q  29 gtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  24595459 gtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaatgtgcaacatcaaataagtgtagaaaatattt 24595370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 1155910 - 1156009
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| | |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1155910 aaaaaaaagagtataaaatagaaggcatcaaacatgattattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 1156009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 42492020 - 42492107
Alignment:
Q  31 ataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  42492020 ataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacattaaataagtgtagaaaatattt 42492107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 44262921 - 44262819
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  44262921 aaaaaaaaaagtataaaataaaaggcatcaaacgtgatcattgatatgcttatagtttatagaacaaacgtgcagcat-aaataagtgtagaaaatattt 44262823  T
Q  119 cctt 122  Q
    ||||    
T  44262822 cctt 44262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 44263563 - 44263462
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  44263563 aaaaaaaagtataaaatagaaggcattaaacgtgatcattgatatgcttatcgtttctagaacaaacgtgcaacatcaaataagtgtagtaaatatttcc 44263464  T
Q  121 tt 122  Q
    ||    
T  44263463 tt 44263462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 1647789 - 1647697
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  1647789 tataaaatagaagacatcaaatgtgatcattgatatgctcatagtttctagaacaaacgtgcaacaacaaataagtgtagaaaatatttcctt 1647697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 4100436 - 4100538
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| |||||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4100436 aatccaaaaaaaaaagtataaaatagaaggcatcaata-tgatcattgatatgcccatagtttctagaacaaacgtgcagcatcaaataaatgtagaaaa 4100534  T
Q  114 tatt 117  Q
    ||||    
T  4100535 tatt 4100538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 5428785 - 5428682
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| || ||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||    
T  5428785 aaaaaaaaaggtataaaatagaaggcatcaaacgtgatcaatgatatgctcataatttatagaacaaacgtgcaacgtcaaataagtgtagaaaatattt 5428686  T
Q  119 cctt 122  Q
    ||||    
T  5428685 cctt 5428682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 16165551 - 16165641
Alignment:
Q  32 taaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  16165551 taaaatagaagacatcaaatgtgatcattgatatgctcatagtttctagaacaaacatgcaacatcaaataagtgtagaaaatatttcctt 16165641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 30084206 - 30084120
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30084206 tataagatagaaggcattaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatat 30084120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 28949742 - 28949838
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    ||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  28949742 aaaaaaaaagtataaaatagaagacatcaaacatgatcattgatatgctcatagtttctataacaaacgtgcaacatcaaataactgtagaaaatat 28949838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 47790893 - 47790801
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    || |||||||||||||||||||||||||||||    
T  47790893 aaagtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaa----caacatcaaataagtgtagaaaatatttcctt 47790801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 48411818 - 48411916
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||    
T  48411818 aaaaaaaaaatataaaatagaaggcatcaaacgtaatcattgatatgctcacagtttctagaacaaacatgcaacattaaataagtgtagaaaatattt 48411916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 25931810 - 25931899
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  25931810 aaaatagaaggcatcaaacgtgataattgatatgctcataatttttagaacaaacatgcaacatcaaataagtgtagaaaatatttcctt 25931899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 27296574 - 27296492
Alignment:
Q  34 aaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  27296574 aaatagaaggcatcaaacgtgatcattcatatgctca--gtttctagaacaaacgtgcagaatcaaataagtgtagaaaatattt 27296492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 12115549 - 12115464
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||| |||||||   |||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  12115549 aaaatagaaggcatcaactatgatcattaatatgctcatagtttctagaccaaacgtgcaacataaaataagtgtagaaaatattt 12115464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 44263302 - 44263241
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44263302 gatatgatcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatatttcctt 44263241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 44099460 - 44099527
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  44099460 aaaaaaaaaaatataaaatagaaggcatcaaacgtgatcattgttatgctcatagtttctagaacaaa 44099527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 6537538 - 6537596
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  6537538 gatatgctcattgtttctaaaacaaacgtgcagcatcaaataagtgtagaaaatatttc 6537596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 52740914 - 52740853
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  52740914 gatatgttcatagtttctagaacaaacgtgcaacaacaaataagtgtagaaaatatttcctt 52740853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 18912609 - 18912541
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaac 87  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  18912609 aaaaaaaaaagtataaaatagaaggcatcaaacgtgataattgatatgttcatagtctctagaacaaac 18912541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 4100692 - 4100746
Alignment:
Q  68 tcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  4100692 tcatagtttctagaacaaacgtgcaacatcaaataaatgtagaaaatgtttcctt 4100746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 44263086 - 44263030
Alignment:
Q  62 atatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||||||||||| ||||    |||||| ||||||||||||||    
T  44263086 atatgctcatagtttctagaacaaacgtgcaacatc----aagtgtcgaaaatatttcctt 44263030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 26832367 - 26832466
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832367 aaaaaaaaaatataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 26832466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 29201799 - 29201696
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29201799 aaaaaaaagagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataactgtagaaaatattt 29201700  T
Q  119 cctt 122  Q
    ||||    
T  29201699 cctt 29201696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 25068445 - 25068348
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25068445 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataactgtagaaaatattt 25068348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 809089 - 808982
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| |||||||||||||||| ||||||||| | |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  809089 aatccaaaaaa-aaagtataaaatagaaggcatcaaacattatcattgatatgctgataatttctagaacaaacttgcagcatcaaataagtgtagaaaa 808991  T
Q  114 tatttcctt 122  Q
    |||||||||    
T  808990 tatttcctt 808982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 9829170 - 9829078
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  9829170 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaagaaacgtgcatcatcaaataagtctagaaaatattt 9829078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 1393802 - 1393701
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    |||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  1393802 aaaaaaaaatataagattgaaggcatcaaacgtgatcattgatatgctcatagtttctaaaacaaacgtgcaacatcaaataaatgtagaaaatatttcc 1393703  T
Q  121 tt 122  Q
    ||    
T  1393702 tt 1393701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 4100167 - 4100267
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||| |||||||||| ||||||||||||||||    
T  4100167 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaaaaaatatgcaacatcaaataa-tgtagaaaatatttcc 4100265  T
Q  121 tt 122  Q
    ||    
T  4100266 tt 4100267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 17906665 - 17906755
Alignment:
Q  32 taaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||    
T  17906665 taaaatagaaggcatcaaacttgatcattgatatgctcatggtttctagaacaaacgtgcaacatcaaataagtgtagaagatgtttcctt 17906755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 4810917 - 4811007
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaa 111  Q
    |||| |||||||||||| | | ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4810917 aaaaaaaagtataaaatcgtaggcatcaaacttaatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaa 4811007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 17203069 - 17203002
Alignment:
Q  55 atcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  17203069 atcattgatatgctcatagtttctagaacaaatgtgcagcatcaaataagtgtagaaaatgtttcctt 17203002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 808686 - 808628
Alignment:
Q  60 tgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  808686 tgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 808628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 23610644 - 23610587
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  23610644 gatatgctcatagtttctagaa-aaacctgcagcatcaaataagtgtagaaaatatttc 23610587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 17201808 - 17201747
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||||    
T  17201808 gatatgctcatagtttctagaacaaacgtggatcaacaaataagtgtagaaaatctttcctt 17201747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 17202842 - 17202781
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||    
T  17202842 gatatgctcatagtttctagaacaaacgtggatcatcaaataagtgcagaaaatctttcctt 17202781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 23622481 - 23622425
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagttt 76  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  23622481 aaaaaaaaagtataaaatagaaggcatcaaacgtggtcattgatatgctcatagttt 23622425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 23622420 - 23622364
Alignment:
Q  56 tcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaa 112  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||    
T  23622420 tcattgatatgctcatagtttctggaacaaacgtacatcatcaaataagtgaagaaa 23622364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 39130647 - 39130798
Alignment:
Q  195 aacaggtaagctctcaaagcttttcctcttaaacaccggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacagcattagat 294  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||| |||||| || ||| ||||||||||||||||| || | |     
T  39130647 aacaggtaagctctcaaagctttccctcttaaacacaggtaatatccttttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaac 39130746  T
Q  295 gctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagc 346  Q
     ||||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  39130747 actccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagc 39130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 23952355 - 23952452
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23952355 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcaccaaataagtgtagaaaatattt 23952452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 47769208 - 47769111
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47769208 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 47769111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 8397601 - 8397697
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  8397601 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttgtagaacaaacgtgcaacatcaaataagtgtagaaaatatttcctt 8397697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 12795974 - 12796066
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12795974 aaagtataaaatagaaagcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 12796066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 52689262 - 52689369
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  52689262 aatccaaaagaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagagaaaacgtgcaacatcaaataagtgtagaaaa 52689361  T
Q  114 tatttcct 121  Q
    ||||||||    
T  52689362 tatttcct 52689369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 24049820 - 24049718
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  24049820 aaaaaaaaggtataaagtagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgccgaatcaaataagtgtagaaaatatttc 24049721  T
Q  120 ctt 122  Q
    |||    
T  24049720 ctt 24049718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 24049538 - 24049437
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24049538 aaaaaaaagtataaaatagaggacatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatatttcc 24049439  T
Q  121 tt 122  Q
    ||    
T  24049438 tt 24049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 52689470 - 52689571
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcc 120  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  52689470 aaaaaaaagtataaaatagaagacatcaaacgtgatcattgatatgctcatagtttttaggacaaacgtgcagcatcaaataagtgtagaaaatatttcc 52689569  T
Q  121 tt 122  Q
    ||    
T  52689570 tt 52689571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 8479001 - 8479093
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8479001 aaagtatagaatagaagacatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatattt 8479093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 36639602 - 36639504
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  36639602 aaaaaaaaagtataaaatagaaggcatctaacgtgatcattgatatgctcatagtgtctagaacaaacgtgcaacatcaaataaatgtagaaaatattt 36639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 54653501 - 54653603
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| ||||||||||||| || |||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  54653501 aaaaaaaaagtataaaatataaggcatcaaatgtgatcattgttatgctcatagtttatagaacaaacgtgcaacatcaaataagtgtagaaaatatttc 54653600  T
Q  120 ctt 122  Q
    |||    
T  54653601 ctt 54653603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 22293155 - 22293052
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||| ||||||||||||||||  ||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22293155 aatccaaaaaa-aaagtataaaatagaagccatcaaaagtgatcgttgatttgctcatagtttctagaacaaacgtgcaggatcaaataagtgtagaaaa 22293057  T
Q  114 tattt 118  Q
    |||||    
T  22293056 tattt 22293052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 8397476 - 8397571
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8397476 aaaaaaaagtataaaatagaagacatcaaacgtgatcattgatatgttcatagtttctagaacaaatgagcagcatcaaataagtgtagaaaatat 8397571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 12899811 - 12899708
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| || |||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  12899811 aaaaaaaaaggtataaaatagaagacatcaaatgtgattattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatgttt 12899712  T
Q  119 cctt 122  Q
    ||||    
T  12899711 cctt 12899708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 21581132 - 21581216
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtaga 110  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21581132 aaagtataaaataaaagacatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtaga 21581216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 41852021 - 41852102
Alignment:
Q  46 tcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtag-aaaatatttccttgaaa 126  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  41852021 tcaaacgtgaccattgatatgctcatagtttctagaacaaacgtggagcatcaaataagtgtagaaaaatatttccttgaaa 41852102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 29967392 - 29967318
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgca 92  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29967392 caaaaaaaaaagtataaaatagaaggcatcaaacgtgatcatcgatatgctcatagtttctagaacaaacgtgca 29967318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 53144712 - 53144801
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||||||||||| |||||||||||||    
T  53144712 aaaatagaaggcatcaaacgttatcattgatatgctcatagtttctcgaacaaatatgcaacatcaaataagtgtaaaaaatatttcctt 53144801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 7821517 - 7821456
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7821517 gatatgatcatagtttctagaacaaacgtgcagcatcaaataagcgtagaaaatatttcctt 7821456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 22292896 - 22292835
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  22292896 gatatgctcatagtttctagaacaaacgtgcatcatcaaataagtgtagaatatatttcctt 22292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 8478930 - 8479001
Alignment:
Q  14 aatccaaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  8478930 aatccaaaaaa-aaagtataaaatagaaggcatcaaacgtgatctttgatatgctcatagtttttagaacaaa 8479001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 21581071 - 21581131
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21581071 aaagtataaaatagaaggcatcaaacgtgatcattgacatgctcatagtttctagaacaaa 21581131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 47631841 - 47631781
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  47631841 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttttagaacaaa 47631781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 4941920 - 4941830
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcct 121  Q
    ||||||||||||| ||  ||||||||||||||     ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  4941920 aaagtataaaataaaagccatcaaacgtgatc-----tatgctcatagtttctagaacaaacatgcatcatcaaataagtgtaaaaaatatttcct 4941830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 8118596 - 8118535
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  8118596 gatatgctcatagtttctagaacaaacgtggatcatcaaataagtgtagaaaatctttcctt 8118535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 28380079 - 28380136
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28380079 gatatgttcatagtttctagaacaaacgtgcggcatcaaataagtgtagaaaatattt 28380136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 28379869 - 28379930
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||    
T  28379869 gatatgctcatagtttctagaacaaacgtgcaacaacaaataagtgtagatagtatttcctt 28379930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 32962805 - 32962895
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |||||||||||||| || ||||||||||       |||||||||| ||||||||||||||| | ||||||||||||    
T  32962805 aaaaaaaagtataaaatagaaggcatcaaacgtgataatcgatatgctca-------tagaacaaacttgcagcatcaaataaatatagaaaatattt 32962895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 12795917 - 12795973
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||||||||  |||||||||||||||||||||| || |||||||||||||||||    
T  12795917 tataaaatagaagacatcaaacgtgatcattgatatacttatagtttctagaacaaa 12795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 7821757 - 7821706
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcat 71  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  7821757 aaaaaaaaagtataaaataaaaggcatcaaacgtgatcattgatatgctcat 7821706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 7809529 - 7809488
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaata 102  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  7809529 gatatgatcatagtttctagaacaaacgtgcagcatcaaata 7809488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 47631779 - 47631718
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaac 87  Q
    |||||||||||| |||  ||||||||||||||||||||| || ||| |||||||||||||||    
T  47631779 aaagtataaaattgaagacatcaaacgtgatcattgataggcccattgtttctagaacaaac 47631718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 7809752 - 7809712
Alignment:
Q  31 ataaaatagaatgcatcaaacgtgatcattgatatgctcat 71  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  7809752 ataaaatagaaggcatcaaacgtggtcattgatatgctcat 7809712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 7809714 - 7809686
Alignment:
Q  94 catcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||    
T  7809714 catcaaataagtgtagaaaatatttcctt 7809686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 7821708 - 7821680
Alignment:
Q  94 catcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||    
T  7821708 catcaaataagtgtagaaaatatttcctt 7821680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 1198124 - 1198031
Alignment:
Q  29 gtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1198124 gtataaaatagaaggcaccaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataaatgtagaaaatatttcctt 1198031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 3990398 - 3990306
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3990398 aaagtataaaatagaaagcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtacagcatcaaataagtgtagaaaatattt 3990306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 27853535 - 27853627
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27853535 tataaaatagaaggcatcaaacgtgatcattgatatgcttatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatatttcctt 27853627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 3458986 - 3459077
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaa 112  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3458986 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcatcatcaaataagtgtagaaa 3459077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 30206035 - 30205933
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  30206035 aaaaaaaaaatataaaatagaaggcatcaaacgtgatcattgatatgctcatggtttctagaacaaacgtgcatcataaaataagtgtagaaaatatttc 30205936  T
Q  120 ctt 122  Q
    |||    
T  30205935 ctt 30205933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 37197533 - 37197625
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  37197533 aaagtataacatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaatgtgcaacatcaaataagtgtagaaaatattt 37197625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 30438893 - 30438998
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatca---aataagtgtagaaaatat 116  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||   ||||||||||||||||||    
T  30438893 aaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaacttgcaacatcaaataataagtgtagaaaatat 30438992  T
Q  117 ttcctt 122  Q
    ||||||    
T  30438993 ttcctt 30438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 34947722 - 34947629
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  34947722 aaagtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctaaaacaaacgtgcaacatcaaataagtgtaaaaaatatttc 34947629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 42045911 - 42045818
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgt-agaaaatattt 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  42045911 aaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctaaaacaaacgtgcatcatcaaataagtgtaagaaaatattt 42045818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 23960430 - 23960527
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| ||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  23960430 aaaaaaaaatataaaatagaaagcattaaacgtgatcatggatatgctcatagtttctagaacaaacgcgcagtatcaaataagtgtagaaaatattt 23960527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 27854276 - 27854372
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| |||||| || ||||||| ||||||||||||||||||||||| |||||||    
T  27854276 aaagtataaaatagaaggcatcaaacgtgatcattgatatgttcatactttctaaaataaacgtgtagcatcaaataagtgtagaaaatttttcctt 27854372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 32063059 - 32062975
Alignment:
Q  33 aaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  32063059 aaaatagaacgcatcaaacttgatcattgatatgctc-tagtttctagaacaaacgtgcagcatcaaataagtgtataaaatattt 32062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 23960696 - 23960756
Alignment:
Q  62 atatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23960696 atatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 23960756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 3990466 - 3990399
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3990466 aaaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 3990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 9389007 - 9388914
Alignment:
Q  29 gtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||| | | |||||||||| |||| |||||||||||||    
T  9389007 gtataaaatagaatgcatcaaacatgatgattgatatgctcataatttctacaacaaacgcgtaacatcaaataaatgtaaaaaatatttcctt 9388914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 13797669 - 13797588
Alignment:
Q  32 taaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaa 113  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  13797669 taaaatagaagacatcaaacgtgatcattgatatgctcatagtttctagaacaaatgtgcaacatcaaacaagtgtataaaa 13797588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 35617906 - 35617836
Alignment:
Q  52 gtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||    
T  35617906 gtgatcatagatatgctcatagtttctagaacaaacatacaacatcaaataagtgtagaaaatatttcctt 35617836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 40399365 - 40399457
Alignment:
Q  20 aaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttc 119  Q
    ||||| ||||||||||||| || ||||||| |||||||||||||||||||||          ||||||||||| ||||||||||||||||||||||||||    
T  40399365 aaaaaaaaagtataaaataaaaggcatcaatcgtgatcattgatatgctcat----------acaaacgtgcatcatcaaataagtgtagaaaatatttc 40399454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 38111336 - 38111275
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  38111336 gatatgttcatagtttctagaacaaacgtccatcatcaaataagtgtagaaattatttcctt 38111275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 29579053 - 29579087
Alignment:
Q  84 aaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||| ||||||||||||||||||||||||||    
T  29579053 aaacgtgcggcatcaaataagtgtagaaaatattt 29579087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 14683155 - 14683115
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaat 101  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  14683155 gatatgctcatggtttctagaacaaatatgcagcatcaaat 14683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 12896277 - 12896374
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  12896277 aaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctaggacaaacgtgcaacatcaaataagtgtagaaaatattt 12896374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 28611659 - 28611762
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28611659 aaaaaaaaaagtataaaatagaaggaatcaaacgtgatcattgatatgttcatagtttctagaacaaacgtgcaacatcaattaagtgtagaaaatattt 28611758  T
Q  119 cctt 122  Q
    ||||    
T  28611759 cctt 28611762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 37131344 - 37131440
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  37131344 aaagtataaaatagaaggtatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgtagcatcaaataagtgtagaaaatattccctt 37131440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 44256723 - 44256631
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  44256723 aaagtataaaataaaatgcatcaaacgtgatcattgatatgttcatagtttctagaacaaacgtgcaacatcaaaaaagtgtagaaaatattt 44256631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 12898266 - 12898176
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12898266 aaagtataaaatagaagacatcaaacttgatcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatat 12898176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 10129380 - 10129453
Alignment:
Q  49 aacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10129380 aacgtgatcattgatatgctcatagtttttagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 10129453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 41326611 - 41326523
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||    
T  41326611 tataaaatagaaggcatcaaaggtgatcattgatatgctcataatttctagaacaaatgtgcagcatcaaataagtgtaaaaaatattt 41326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 627836 - 627741
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    |||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||    
T  627836 aaaaaaaagtataaaatataaggcatcaaacgtgatcattgatatgctcatagtttatagaataaacgtgcaacatcaaataagtgcagaaaatat 627741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 11657709 - 11657601
Alignment:
Q  14 aatccaaaaaacaa-agtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaa 112  Q
    ||||||||||| || |||| ||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  11657709 aatccaaaaaaaaagagtaaaaaatagaaggcatcaaacatgatcat-gatatgcttatagtttctagaacaaatgtgcagcattaaataagtgtagaaa 11657611  T
Q  113 atatttcctt 122  Q
    ||||||||||    
T  11657610 atatttcctt 11657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 6348326 - 6348228
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagc-atcaaataagtgtagaaaatattt 118  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||| || | |||||||||||| |||||||||||    
T  6348326 aaaaaaaagtataaaatagaagacatcaaacgtgatcattgatatgctcatagtttctaaaacaaacgttcatcaatcaaataagtgaagaaaatattt 6348228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 28611916 - 28611977
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611916 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 28611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 41995603 - 41995692
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgta 108  Q
    |||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  41995603 aaaaaaaagagtataaaatagaaggcatcaaacatgatcattgatatgctcatagtttctagaacaaacgtgcaatatcaaataaatgta 41995692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 29550396 - 29550296
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatt 117  Q
    ||||||| | ||||||||||||||  |||||||| |||||||||||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  29550396 caaaaaaaagagtataaaatagaagacatcaaacatgatcattgatatgttcatagtttttagaacaaatgtgcaacatcaaattagtgtagaaaatatt 29550297  T
Q  118 t 118  Q
    |    
T  29550296 t 29550296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 28612763 - 28612824
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28612763 gatatgctcatagtttctagaacaaacgtgcagtatcaaataagtgtagaaaatatttcctt 28612824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 28612553 - 28612613
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28612553 gatatgctcatagtttctagaacaaacgtgcagcatcaaataag-gtagaaaatatttcctt 28612613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 28612130 - 28612190
Alignment:
Q  62 atatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  28612130 atatgctcatagtttctagaacaaacgtacaacatcaaataagtgtagaaaatatttcctt 28612190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 28612341 - 28612401
Alignment:
Q  61 gatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28612341 gatatgctcatagtttctagaacaaacgtgcaacatcaaataag-gtagaaaatatttcctt 28612401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 11736125 - 11736066
Alignment:
Q  63 tatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  11736125 tatgctcatagtttctagaacaaacgtgcggtatcaaataagtatagaaaatatttcctt 11736066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 14336585 - 14336673
Alignment:
Q  30 tataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatatttcctt 122  Q
    ||||||||||||   |||||||||||||||    || |||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  14336585 tataaaatagaagatatcaaacgtgatcat----atcctcatagtttctagaacaaacgtgcaacatcaaataaacgtagaaaatatttcctt 14336673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 44256791 - 44256724
Alignment:
Q  19 aaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||||||    
T  44256791 aaaaaaaaaagtataaaatagaaggcattaaacgtgatcattgatatgctcatggtttctaaaacaaa 44256724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 12898325 - 12898267
Alignment:
Q  28 agtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  12898325 agtataaaatagaaggtatcaaacatgatcattgatatgctcatagtttctagaacaaa 12898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 13511 - 13414
Alignment:
Q  21 aaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatattt 118  Q
    |||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  13511 aaaaaaaagtataaaatagaaggtgtcaaacgtgatcattgatatgctcatagtttctacaacaaacgtgcaacaccaaataagtgtagaaaatattt 13414  T

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Target: scaffold0018 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 163653 - 163747
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatca----ttgatatgctcatagtttctagaacaaacgtgcagcatcaaataagtgtagaaaatat 116  Q
    ||||||||||| |||| ||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  163653 aaagtataaaacagaaggcatcaaacgtgatcagtcattgatatgctcatagtttctagaacaaacgtgcaacatcaaataagtgtagaaaatat 163747  T

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Target: scaffold0018; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 163584 - 163652
Alignment:
Q  18 caaaaaacaaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaa 86  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  163584 caaaaaaaaaagtataaaatagaaggcatcaaacgtgatcattgatatgctcatagtttctaaaacaaa 163652  T

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Target: scaffold0320 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 14433 - 14529
Alignment:
Q  26 aaagtataaaatagaatgcatcaaacgtgatcattgatatgctcatagtttctagaacaaacgtgcagcatcaaataag----tgtagaaaatattt 118  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    ||||||||||||||    
T  14433 aaagtataaaatagaagacatcaatcgtgatcattgatatgctcatagtttctagaaaaaacgtgcaacatcaaataagtaagtgtagaaaatattt 14529  T

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