View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2038_low_25 (Length: 324)
Name: NF2038_low_25
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 307
Target Start/End: Original strand, 40639948 - 40640206
Alignment:
| Q |
41 |
gatgcaagggatgactaatgcctagaagacgatgcttgtagattcaagatatataaacttgggttggaaataagcatgatcgttaaatttgagtactcat |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40639948 |
gatgcaagggatgactaatgcctagaagaggatgcttgtagattcaagatatataaacttgggttggaaataagcatgatagttaaatttgagtactcat |
40640047 |
T |
|
| Q |
141 |
ttcatattgattctgattttgacaagaaaatttacaataactagttgatttggttcggatatatacatacatcttgtnnnnnnngtgaatgcatatcaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
40640048 |
ttcatattgattctgattttgacaagaaaatttacactaactagttgatttggttcgg--atatacatacatcttgtaacaaaagtgaatgcatgtcaat |
40640145 |
T |
|
| Q |
241 |
tttaaagcttcaaattctgtgcatctaaaatgattttgttaaaagctataactttgaaactttaaaa |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40640146 |
tttaaagcttcaaa------gcatctaaaatgattttgttaaaagctataactttgaaactttaaaa |
40640206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University