View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_29 (Length: 250)
Name: NF2038_low_29
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_29 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 43300151 - 43299917
Alignment:
| Q |
16 |
atagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctcaagtacattggtaggaaatttcagcaa |
115 |
Q |
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| T |
43300151 |
atagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctcaagtacattggtaggaaattttagcaa |
43300052 |
T |
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| Q |
116 |
aaatcaatacgacatgcaaatgtgacgtgaataagaaaaccattcttaattttgatgtacannnnnnngacaaaaagatcgccaaggatatagagcttat |
215 |
Q |
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| T |
43300051 |
aaatcaatacgacatgcaaatgtgacgtgaataagaaaaccattcttaattttgatgtacatttttttgacaaaaagatcgccaaggatatagagcttat |
43299952 |
T |
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| Q |
216 |
ttatatcaatgaagtagtatcaaaacatcacaaga |
250 |
Q |
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| T |
43299951 |
ttatatcaatgaagtagtatcaaaacatcacaaga |
43299917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 27647103 - 27646869
Alignment:
| Q |
16 |
atagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctcaagtacattggtaggaaatttcagcaa |
115 |
Q |
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|||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27647103 |
atagaaaatgaaaaggcgctatacatgatacttttagtaaatgatcaattcgtcaatttttccaacattcctcgagtacattggtaggaaatttcagcaa |
27647004 |
T |
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| Q |
116 |
aaatcaatacgacatgcaaatgtgacgtgaataagaaaaccattcttaattttgatgtacannnnnnngacaaaaagatcgccaaggatatagagcttat |
215 |
Q |
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| T |
27647003 |
aaatcaatatgacatgcaaatgtgacgagaataagaaaaccattctcaattttgatgttcatttttttgacgaaaagatcgccaaggatatagagcttat |
27646904 |
T |
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| Q |
216 |
ttatatcaatgaagtagtatcaaaacatcacaaga |
250 |
Q |
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| T |
27646903 |
ttatatcaatgaagtagtatcaaaacatcacaaga |
27646869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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