View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_35 (Length: 220)
Name: NF2038_low_35
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_35 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 25028165 - 25028362
Alignment:
| Q |
1 |
caagaacatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacccacactaccacctccataaaccaaatcaatccttctctcaacctt |
100 |
Q |
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| T |
25028165 |
caagaacatgacgtccaccatcatgaactgcttgagaaacaagacccatcagacccacactaccacctccataaaccaaatcaatccttctctcaacctt |
25028264 |
T |
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| Q |
101 |
caacattgaaaatacaaaccaaaatgacacgtgtaactatagtaatcatgacaacaaaaccaaaccaagctagaaagaaagaaacaataatattgatt |
198 |
Q |
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| T |
25028265 |
caacattgaaaacacaaaccaaaatgacacgtgtaactatagtaatcatgacaacaaaaccaaaccaagctagaaagaaagaaacaataatattgatt |
25028362 |
T |
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Target: scaffold0041 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 77310 - 77261
Alignment:
| Q |
6 |
acatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacc |
55 |
Q |
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| T |
77310 |
acatggcgaccaccatcatgaacagcttgagaaactaaacccatgagacc |
77261 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 40888974 - 40889023
Alignment:
| Q |
6 |
acatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacc |
55 |
Q |
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||||| ||||||||||||||||| ||||||||||| | |||||| ||||| |
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| T |
40888974 |
acatggcgaccaccatcatgaacagcttgagaaactaaacccatgagacc |
40889023 |
T |
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