View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_5 (Length: 599)
Name: NF2038_low_5
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 25028738 - 25028877
Alignment:
| Q |
242 |
ctaagatcatgcaagaaggctgatcaaatgacagagagattccagctagcaaatttctctctttcatgagaaacacaacaatcttctcattcctccacaa |
341 |
Q |
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| T |
25028738 |
ctaagatcatgcaagaaggctgatcaactgacagagagattccagctagcaaatttctctctttcatgagaaacacaacaatcttctcattcctcaacaa |
25028837 |
T |
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| Q |
342 |
tcttaacctagatttggaactttataaaattttattagct |
381 |
Q |
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| T |
25028838 |
tcttaacctagatttggaactttataaaattttattagct |
25028877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 25028502 - 25028638
Alignment:
| Q |
8 |
gtagcccttggctatagggnnnnnnntcatgaaagattgtgggaaatggtaaaggctaatagcacgctccgtatagtgtaatgatacaaagctttgcacg |
107 |
Q |
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| T |
25028502 |
gtagcccttggctatagggaaaaaaatcatgaaagattgtgggaaatggtaaaggctaatagcacgctccgtatagtgtaatgatacaaagctttgcacg |
25028601 |
T |
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| Q |
108 |
ttcattttcctagaaaagtgcagaaagcatttcttga |
144 |
Q |
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| T |
25028602 |
ttcattttcctagaaaagtgcagaaagcatttcttga |
25028638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 25028940 - 25029015
Alignment:
| Q |
443 |
ccacaaaaatatgaacatgaggaatgagaagatgaacatgaacaaagaaagatagaatgtagaatctgaccataaa |
518 |
Q |
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| T |
25028940 |
ccacaaaaatatgaacatgagtgatgagaagatgaacatgaacaaagaaagatagaatgtagaatctgaccataaa |
25029015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 25029055 - 25029101
Alignment:
| Q |
535 |
ctaaaaaagacattttttggaaggaaaacatgattgatgaaagtgtt |
581 |
Q |
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| T |
25029055 |
ctaaaaaagacattttttggaaggaaaacatgattgatgaaagtgtt |
25029101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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