View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_7 (Length: 524)
Name: NF2038_low_7
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 407 - 510
Target Start/End: Original strand, 33525886 - 33525989
Alignment:
| Q |
407 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgacattgctagagaga |
506 |
Q |
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| T |
33525886 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgatattgctagagaga |
33525985 |
T |
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| Q |
507 |
catg |
510 |
Q |
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|||| |
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| T |
33525986 |
catg |
33525989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 33525542 - 33525631
Alignment:
| Q |
63 |
tgtattataacgatcatgttggtgtagaagagactcatcgtgacagcgaatcatcaagagctgtgttctcaaaatggttcatggttatgc |
152 |
Q |
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| T |
33525542 |
tgtattataacgatcatgttggtgtagaagagactcatcgcgacagcgaatcatcaagagctgtgttctcaaaatggttcatggtgatgc |
33525631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 33525684 - 33525754
Alignment:
| Q |
205 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
275 |
Q |
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| T |
33525684 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
33525754 |
T |
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