View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2038_low_8 (Length: 485)

Name: NF2038_low_8
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2038_low_8
NF2038_low_8
[»] chr5 (5 HSPs)
chr5 (183-468)||(9394334-9394620)
chr5 (1-151)||(9394164-9394314)
chr5 (75-130)||(9394011-9394066)
chr5 (75-134)||(9394125-9394184)
chr5 (338-394)||(9393947-9394002)
[»] chr7 (1 HSPs)
chr7 (272-468)||(1341951-1342161)
[»] chr6 (3 HSPs)
chr6 (424-468)||(31944088-31944132)
chr6 (96-134)||(31943650-31943688)
chr6 (296-366)||(31943907-31943977)
[»] chr2 (1 HSPs)
chr2 (424-464)||(35535401-35535441)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 183 - 468
Target Start/End: Original strand, 9394334 - 9394620
Alignment:
Q  183 tttcaacataattaaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaacccta 282  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394334 tttcaacataaataaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaacccta 9394433  T
Q  283 aagcagaaaattctcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccct-aaacatcaaattttcaac 381  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  9394434 aagaagaaaattttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaac 9394533  T
Q  382 aagaaatcaaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaat 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394534 aagaaatcaaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaat 9394620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9394164 - 9394314
Alignment:
Q  1 acacaattttcaacattaaatcaaaagaaaggaacctagaaccaaaattttaacatgaatcnnnnnnnnnnnnncataatttccatcaccaaatcaaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||             ||||||||||||||||||||||||||    
T  9394164 acacaattttcaacattaaatcaaaagaaaggaacctagaaccaaaatttcaacatgaatcaaaaaataaaaaacataatttccatcaccaaatcaaaga 9394263  T
Q  101 aatgaaccataaaacacagttttcaacatgaaattcaaaccaatgaaccat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394264 aatgaaccataaaacacagttttcaacatgaaattcaaaccaatgaaccat 9394314  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 9394011 - 9394066
Alignment:
Q  75 cataatttccatcaccaaatcaaagaaatgaaccataaaacacagttttcaacatg 130  Q
    |||||| |||| |||||||||||||||||||| | |||||||||||||||||||||    
T  9394011 cataatctccaacaccaaatcaaagaaatgaatcctaaaacacagttttcaacatg 9394066  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 9394125 - 9394184
Alignment:
Q  75 cataatttccatcaccaaatcaaagaaatgaaccataaaacacagttttcaacatgaaat 134  Q
    ||||||||||| |||||||||||||||||||| |  |||||||| |||||||||| ||||    
T  9394125 cataatttccaacaccaaatcaaagaaatgaatccaaaaacacaattttcaacattaaat 9394184  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 9393947 - 9394002
Alignment:
Q  338 agcatgcaatcaaagaaataaaccctaaacatcaaattttcaacaagaaatcaaaaa 394  Q
    |||||| |||||||||||| || |||||| | ||||||||||||| |||||||||||    
T  9393947 agcatgaaatcaaagaaatgaatcctaaa-accaaattttcaacatgaaatcaaaaa 9394002  T

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Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 272 - 468
Target Start/End: Original strand, 1341951 - 1342161
Alignment:
Q  272 aataaaccctaaagcagaaaattctcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa-catc 370  Q
    |||||||||||||  | |||||| | ||||||||||||||||||||||||||| | |||| ||  || ||||||||||||||||||||||||||| || |    
T  1341951 aataaaccctaaaaaacaaaattttgaacataaaatcaaacaaaataacataata-cacaattttcaacatgcaatcaaagaaataaaccctaaaacacc 1342049  T
Q  371 aaattttcaacaagaaat--------------caaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccag 456  Q
    ||| |||||||| |||||              ||||| || |||||||| ||||||  || ||||| |||||||||||||||||||||||||||||||||    
T  1342050 aaaatttcaacatgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccag 1342149  T
Q  457 cttatataaaat 468  Q
    ||||||||||||    
T  1342150 cttatataaaat 1342161  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 468
Target Start/End: Original strand, 31944088 - 31944132
Alignment:
Q  424 aatagaaaccttgacataagcattatcctccagcttatataaaat 468  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  31944088 aatagaaaccttgacataagcattatcgtccagcttatacaaaat 31944132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 31943650 - 31943688
Alignment:
Q  96 aaagaaatgaaccataaaacacagttttcaacatgaaat 134  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  31943650 aaagaaatgaaccctaaaacacatttttcaacatgaaat 31943688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 31943907 - 31943977
Alignment:
Q  296 tcaacataaaatcaaacaaaataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa 366  Q
    |||||||||||||||||||||||||||||| ||  | ||  || |||| ||||| ||||||||| ||||||    
T  31943907 tcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcctaaa 31943977  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 35535401 - 35535441
Alignment:
Q  424 aatagaaaccttgacataagcattatcctccagcttatata 464  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  35535401 aatagaaaccttgacataagcattattatccagattatata 35535441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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